Strain Fitness in Pseudomonas simiae WCS417 around PS417_03115

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03110 and PS417_03115 are separated by 332 nucleotidesPS417_03115 and PS417_03120 are separated by 58 nucleotidesPS417_03120 and PS417_03125 are separated by 28 nucleotides PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742 _03110 PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266 _03115 PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729 _03120 PS417_03125: PS417_03125 - potassium ABC transporter ATPase, at 715,758 to 717,440 _03125 Position (kb) 715 716Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.278 kb on + strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.279 kb on - strand, within PS417_03110at 714.289 kb on - strand, within PS417_03110at 714.445 kb on + strand, within PS417_03110at 714.535 kb on + strand, within PS417_03110at 714.665 kb on + strandat 714.796 kb on - strandat 714.824 kb on + strandat 714.846 kb on + strandat 714.846 kb on + strandat 714.948 kb on + strandat 714.959 kb on + strandat 714.970 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.029 kb on + strandat 715.033 kb on - strandat 715.033 kb on - strandat 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.102 kb on + strand, within PS417_03115at 715.103 kb on - strand, within PS417_03115at 715.131 kb on + strand, within PS417_03115at 715.132 kb on - strand, within PS417_03115at 715.278 kb on + strandat 715.278 kb on + strandat 715.278 kb on + strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.279 kb on - strandat 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.511 kb on - strand, within PS417_03120at 715.624 kb on + strand, within PS417_03120at 715.625 kb on - strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120at 715.667 kb on + strand, within PS417_03120at 715.858 kb on + strandat 715.859 kb on - strandat 715.859 kb on - strandat 715.859 kb on - strandat 715.861 kb on + strandat 715.862 kb on - strandat 715.862 kb on - strandat 715.862 kb on - strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.904 kb on + strandat 715.905 kb on - strandat 715.905 kb on - strandat 715.905 kb on - strandat 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.963 kb on + strand, within PS417_03125at 715.964 kb on - strand, within PS417_03125at 715.964 kb on - strand, within PS417_03125at 716.002 kb on + strand, within PS417_03125at 716.002 kb on + strand, within PS417_03125at 716.003 kb on - strand, within PS417_03125at 716.003 kb on - strand, within PS417_03125at 716.008 kb on + strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.009 kb on - strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.020 kb on + strand, within PS417_03125at 716.021 kb on - strand, within PS417_03125at 716.134 kb on + strand, within PS417_03125

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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714,278 + PS417_03110 0.51 +0.3
714,278 + PS417_03110 0.51 +1.3
714,278 + PS417_03110 0.51 -1.2
714,278 + PS417_03110 0.51 -0.8
714,278 + PS417_03110 0.51 +1.1
714,278 + PS417_03110 0.51 +2.2
714,278 + PS417_03110 0.51 -2.3
714,278 + PS417_03110 0.51 -2.1
714,279 - PS417_03110 0.51 +1.4
714,279 - PS417_03110 0.51 -0.3
714,279 - PS417_03110 0.51 +1.8
714,279 - PS417_03110 0.51 -3.2
714,279 - PS417_03110 0.51 -1.1
714,289 - PS417_03110 0.52 -1.8
714,445 + PS417_03110 0.68 +0.8
714,535 + PS417_03110 0.78 -1.0
714,665 + +0.2
714,796 - +0.2
714,824 + +3.1
714,846 + -1.2
714,846 + -2.6
714,948 + +3.1
714,959 + +0.1
714,970 + -1.4
715,029 + -1.8
715,029 + -0.1
715,029 + +1.0
715,033 - +2.0
715,033 - +0.3
715,102 + PS417_03115 0.14 +0.1
715,102 + PS417_03115 0.14 -1.0
715,102 + PS417_03115 0.14 -1.9
715,102 + PS417_03115 0.14 -1.4
715,102 + PS417_03115 0.14 -3.9
715,103 - PS417_03115 0.15 -0.3
715,131 + PS417_03115 0.29 -3.2
715,132 - PS417_03115 0.30 -0.3
715,278 + +1.5
715,278 + +0.5
715,278 + -1.6
715,279 - +1.2
715,279 - -1.6
715,279 - +1.2
715,511 - PS417_03120 0.46 +1.4
715,511 - PS417_03120 0.46 -0.8
715,511 - PS417_03120 0.46 -0.6
715,624 + PS417_03120 0.74 +1.5
715,625 - PS417_03120 0.74 +0.9
715,667 + PS417_03120 0.84 -1.4
715,667 + PS417_03120 0.84 +0.9
715,858 + +1.1
715,859 - +0.0
715,859 - -0.8
715,859 - +0.8
715,861 + -0.4
715,862 - -0.3
715,862 - -2.0
715,862 - -0.1
715,904 + -2.1
715,904 + +0.8
715,904 + -0.0
715,904 + +1.0
715,905 - -2.8
715,905 - -1.6
715,905 - -0.7
715,963 + PS417_03125 0.12 +0.3
715,963 + PS417_03125 0.12 +0.6
715,963 + PS417_03125 0.12 +0.3
715,963 + PS417_03125 0.12 -0.8
715,963 + PS417_03125 0.12 +0.4
715,963 + PS417_03125 0.12 +1.0
715,964 - PS417_03125 0.12 +0.1
715,964 - PS417_03125 0.12 -0.2
716,002 + PS417_03125 0.14 +1.7
716,002 + PS417_03125 0.14 +1.2
716,003 - PS417_03125 0.15 +0.1
716,003 - PS417_03125 0.15 +0.5
716,008 + PS417_03125 0.15 +0.2
716,009 - PS417_03125 0.15 -1.6
716,009 - PS417_03125 0.15 +1.1
716,009 - PS417_03125 0.15 +0.2
716,009 - PS417_03125 0.15 +0.4
716,020 + PS417_03125 0.16 -0.2
716,020 + PS417_03125 0.16 -0.5
716,020 + PS417_03125 0.16 +0.6
716,020 + PS417_03125 0.16 +1.1
716,021 - PS417_03125 0.16 +0.4
716,134 + PS417_03125 0.22 +0.1

Or see this region's nucleotide sequence