Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27650 and PS417_27655 are separated by 177 nucleotides PS417_27655 and PS417_27660 are separated by 149 nucleotides
PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550
_27650
PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648
_27655
PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201
_27660
Position (kb) 5963
5964
5965 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5962.989 kb on - strand at 5963.001 kb on - strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.034 kb on - strand, within PS417_27650 at 5963.244 kb on - strand, within PS417_27650 at 5963.469 kb on + strand at 5963.515 kb on + strand at 5963.516 kb on - strand at 5963.840 kb on + strand, within PS417_27655 at 5963.840 kb on + strand, within PS417_27655 at 5963.843 kb on + strand, within PS417_27655 at 5963.844 kb on - strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.168 kb on - strand, within PS417_27655 at 5964.201 kb on - strand, within PS417_27655 at 5964.393 kb on + strand, within PS417_27655 at 5964.553 kb on - strand, within PS417_27655 at 5964.624 kb on - strand at 5964.662 kb on - strand at 5964.662 kb on - strand at 5964.681 kb on - strand at 5964.787 kb on - strand at 5964.966 kb on + strand, within PS417_27660 at 5965.317 kb on + strand, within PS417_27660 at 5965.317 kb on + strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.434 kb on + strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.456 kb on - strand at 5965.456 kb on - strand, within PS417_27660 at 5965.503 kb on + strand, within PS417_27660 at 5965.548 kb on + strand, within PS417_27660
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,962,989 - -0.1 5,963,001 - PS417_27650 0.72 +0.3 5,963,033 + PS417_27650 0.74 +1.1 5,963,033 + PS417_27650 0.74 +0.7 5,963,033 + PS417_27650 0.74 +1.9 5,963,033 + PS417_27650 0.74 -0.2 5,963,033 + PS417_27650 0.74 -0.6 5,963,033 + PS417_27650 0.74 +2.5 5,963,034 - PS417_27650 0.74 -2.4 5,963,244 - PS417_27650 0.84 +1.7 5,963,469 + +0.2 5,963,515 + +1.1 5,963,516 - -1.4 5,963,840 + PS417_27655 0.12 -1.3 5,963,840 + PS417_27655 0.12 +1.3 5,963,843 + PS417_27655 0.12 +0.5 5,963,844 - PS417_27655 0.13 +0.5 5,964,163 + PS417_27655 0.47 +1.8 5,964,163 + +0.3 5,964,163 + PS417_27655 0.47 +0.5 5,964,163 + PS417_27655 0.47 +0.9 5,964,167 + PS417_27655 0.48 -0.4 5,964,167 + PS417_27655 0.48 +2.5 5,964,168 - PS417_27655 0.48 +1.6 5,964,201 - PS417_27655 0.51 +1.9 5,964,393 + PS417_27655 0.72 -0.8 5,964,553 - PS417_27655 0.90 -0.9 5,964,624 - +0.2 5,964,662 - -0.7 5,964,662 - +0.1 5,964,681 - -0.4 5,964,787 - +0.9 5,964,966 + PS417_27660 0.12 -2.1 5,965,317 + PS417_27660 0.37 +0.3 5,965,317 + PS417_27660 0.37 +3.3 5,965,318 - PS417_27660 0.37 -0.7 5,965,318 - PS417_27660 0.37 -0.4 5,965,318 - PS417_27660 0.37 -0.1 5,965,434 + PS417_27660 0.45 +0.7 5,965,452 - PS417_27660 0.47 +0.4 5,965,452 - PS417_27660 0.47 +1.6 5,965,452 - PS417_27660 0.47 -1.3 5,965,456 - -0.1 5,965,456 - PS417_27660 0.47 +0.0 5,965,503 + PS417_27660 0.50 -0.9 5,965,548 + PS417_27660 0.53 -1.8
Or see this region's nucleotide sequence