Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02665 and PS417_02670 overlap by 4 nucleotides PS417_02670 and PS417_02675 overlap by 4 nucleotides
PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466
_02665
PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338
_02670
PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051
_02675
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.534 kb on + strand, within PS417_02665 at 610.535 kb on - strand, within PS417_02665 at 610.535 kb on - strand, within PS417_02665 at 610.567 kb on + strand, within PS417_02665 at 610.567 kb on + strand, within PS417_02665 at 610.568 kb on - strand, within PS417_02665 at 610.642 kb on + strand, within PS417_02665 at 610.642 kb on + strand, within PS417_02665 at 610.748 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.784 kb on - strand, within PS417_02665 at 610.935 kb on - strand, within PS417_02665 at 610.963 kb on + strand, within PS417_02665 at 610.963 kb on + strand, within PS417_02665 at 610.964 kb on - strand, within PS417_02665 at 610.964 kb on - strand, within PS417_02665 at 610.993 kb on + strand, within PS417_02665 at 610.994 kb on - strand, within PS417_02665 at 610.994 kb on - strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.127 kb on - strand, within PS417_02665 at 611.127 kb on - strand, within PS417_02665 at 611.449 kb on - strand at 611.449 kb on - strand at 611.628 kb on + strand, within PS417_02670 at 611.628 kb on + strand, within PS417_02670 at 611.758 kb on - strand, within PS417_02670 at 611.961 kb on + strand, within PS417_02670 at 611.962 kb on - strand, within PS417_02670 at 612.307 kb on - strand at 612.307 kb on - strand at 612.335 kb on - strand at 612.335 kb on - strand at 612.347 kb on - strand at 612.374 kb on + strand at 612.377 kb on + strand at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.727 kb on + strand, within PS417_02675 at 613.049 kb on + strand at 613.050 kb on - strand at 613.117 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.239 kb on + strand at 613.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 610,534 + PS417_02665 0.27 -0.3 610,535 - PS417_02665 0.27 +0.1 610,535 - PS417_02665 0.27 +2.8 610,567 + PS417_02665 0.30 +1.1 610,567 + PS417_02665 0.30 +1.1 610,568 - PS417_02665 0.30 -0.8 610,642 + PS417_02665 0.35 +1.4 610,642 + PS417_02665 0.35 +0.9 610,748 + PS417_02665 0.44 -1.0 610,783 + PS417_02665 0.46 -2.6 610,783 + PS417_02665 0.46 -0.5 610,783 + PS417_02665 0.46 -1.9 610,784 - PS417_02665 0.47 -0.3 610,935 - PS417_02665 0.58 -1.0 610,963 + PS417_02665 0.61 -1.0 610,963 + PS417_02665 0.61 -0.2 610,964 - PS417_02665 0.61 +0.9 610,964 - PS417_02665 0.61 +0.5 610,993 + PS417_02665 0.63 -1.6 610,994 - PS417_02665 0.63 -0.6 610,994 - PS417_02665 0.63 -0.4 611,029 + PS417_02665 0.66 +0.8 611,029 + PS417_02665 0.66 -3.6 611,029 + PS417_02665 0.66 +1.7 611,030 - PS417_02665 0.66 +1.2 611,030 - PS417_02665 0.66 -1.9 611,030 - PS417_02665 0.66 -2.4 611,127 - PS417_02665 0.73 -0.2 611,127 - PS417_02665 0.73 -0.8 611,449 - +0.4 611,449 - -1.3 611,628 + PS417_02670 0.19 +1.2 611,628 + PS417_02670 0.19 +1.8 611,758 - PS417_02670 0.34 -1.3 611,961 + PS417_02670 0.57 +0.2 611,962 - PS417_02670 0.57 +1.1 612,307 - +0.9 612,307 - -2.4 612,335 - +1.0 612,335 - -0.2 612,347 - -0.5 612,374 + -1.0 612,377 + +0.2 612,561 - PS417_02675 0.32 +0.8 612,561 - PS417_02675 0.32 +0.3 612,561 - PS417_02675 0.32 +3.0 612,561 - PS417_02675 0.32 +0.6 612,727 + PS417_02675 0.55 -1.3 613,049 + -2.7 613,050 - -0.3 613,117 - -1.5 613,237 + -2.6 613,237 + +1.3 613,237 + +1.6 613,238 - -3.1 613,238 - +0.3 613,238 - +1.6 613,238 - +0.4 613,239 + +0.9 613,240 - -0.1
Or see this region's nucleotide sequence