Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26815 and PS417_26820 overlap by 8 nucleotides PS417_26820 and PS417_26825 overlap by 1 nucleotides PS417_26825 and PS417_26830 are separated by 71 nucleotides
PS417_26815: PS417_26815 - peptidase M16, at 5,790,089 to 5,791,444
_26815
PS417_26820: PS417_26820 - peptidase M16, at 5,791,437 to 5,792,927
_26820
PS417_26825: PS417_26825 - 16S rRNA methyltransferase, at 5,792,927 to 5,793,535
_26825
PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602
_26830
Position (kb) 5791
5792
5793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5790.786 kb on - strand, within PS417_26815 at 5790.992 kb on + strand at 5791.270 kb on + strand, within PS417_26815 at 5791.382 kb on + strand at 5791.383 kb on - strand at 5791.383 kb on - strand at 5791.807 kb on + strand, within PS417_26820 at 5791.807 kb on + strand, within PS417_26820 at 5791.807 kb on + strand, within PS417_26820 at 5791.808 kb on - strand, within PS417_26820 at 5791.808 kb on - strand, within PS417_26820 at 5791.911 kb on - strand, within PS417_26820 at 5791.929 kb on - strand, within PS417_26820 at 5792.167 kb on - strand, within PS417_26820 at 5792.258 kb on + strand, within PS417_26820 at 5792.388 kb on + strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820 at 5792.481 kb on + strand, within PS417_26820 at 5792.482 kb on - strand, within PS417_26820 at 5792.490 kb on + strand, within PS417_26820 at 5792.601 kb on + strand at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.782 kb on + strand at 5792.926 kb on - strand at 5793.419 kb on + strand, within PS417_26825 at 5793.503 kb on + strand at 5793.507 kb on - strand at 5793.595 kb on - strand at 5793.622 kb on - strand at 5793.696 kb on + strand at 5793.696 kb on + strand at 5793.835 kb on + strand, within PS417_26830
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,790,786 - PS417_26815 0.51 -2.5 5,790,992 + -1.2 5,791,270 + PS417_26815 0.87 -0.5 5,791,382 + +1.8 5,791,383 - +0.1 5,791,383 - +1.3 5,791,807 + PS417_26820 0.25 -2.4 5,791,807 + PS417_26820 0.25 -0.0 5,791,807 + PS417_26820 0.25 +0.8 5,791,808 - PS417_26820 0.25 +0.5 5,791,808 - PS417_26820 0.25 +1.8 5,791,911 - PS417_26820 0.32 -1.0 5,791,929 - PS417_26820 0.33 +0.8 5,792,167 - PS417_26820 0.49 -1.0 5,792,258 + PS417_26820 0.55 +0.8 5,792,388 + PS417_26820 0.64 +1.6 5,792,389 - PS417_26820 0.64 +1.1 5,792,389 - PS417_26820 0.64 -1.6 5,792,481 + PS417_26820 0.70 +1.6 5,792,482 - PS417_26820 0.70 -1.3 5,792,490 + PS417_26820 0.71 +0.9 5,792,601 + -0.7 5,792,724 + PS417_26820 0.86 -1.2 5,792,724 + PS417_26820 0.86 +1.4 5,792,724 + PS417_26820 0.86 -0.5 5,792,782 + +0.8 5,792,926 - -2.0 5,793,419 + PS417_26825 0.81 +0.3 5,793,503 + +0.3 5,793,507 - -0.5 5,793,595 - +3.8 5,793,622 - +0.5 5,793,696 + +1.8 5,793,696 + -1.8 5,793,835 + PS417_26830 0.23 -0.1
Or see this region's nucleotide sequence