Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26365 and PS417_26370 are separated by 82 nucleotides PS417_26370 and PS417_26375 are separated by 69 nucleotides
PS417_26365: PS417_26365 - EmrB/QacA subfamily drug resistance transporter, at 5,700,926 to 5,702,353
_26365
PS417_26370: PS417_26370 - RNA helicase, at 5,702,436 to 5,703,821
_26370
PS417_26375: PS417_26375 - membrane protein, at 5,703,891 to 5,705,069
_26375
Position (kb) 5702
5703
5704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5702.008 kb on - strand, within PS417_26365 at 5702.015 kb on - strand, within PS417_26365 at 5702.399 kb on + strand at 5702.400 kb on - strand at 5702.441 kb on + strand at 5702.459 kb on + strand at 5702.463 kb on - strand at 5702.511 kb on + strand at 5702.650 kb on - strand, within PS417_26370 at 5702.841 kb on - strand, within PS417_26370 at 5702.934 kb on + strand, within PS417_26370 at 5703.148 kb on + strand, within PS417_26370 at 5703.149 kb on - strand, within PS417_26370 at 5703.820 kb on - strand at 5703.820 kb on - strand at 5703.834 kb on + strand at 5703.876 kb on + strand at 5703.877 kb on - strand at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand at 5704.052 kb on + strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.056 kb on + strand, within PS417_26375 at 5704.057 kb on - strand, within PS417_26375 at 5704.167 kb on + strand, within PS417_26375 at 5704.615 kb on + strand, within PS417_26375 at 5704.616 kb on - strand, within PS417_26375 at 5704.809 kb on + strand, within PS417_26375 at 5704.810 kb on - strand, within PS417_26375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,702,008 - PS417_26365 0.76 +1.4 5,702,015 - PS417_26365 0.76 +1.7 5,702,399 + -2.2 5,702,400 - -2.4 5,702,441 + -2.8 5,702,459 + +0.5 5,702,463 - -0.5 5,702,511 + -1.2 5,702,650 - PS417_26370 0.15 -3.1 5,702,841 - PS417_26370 0.29 -2.3 5,702,934 + PS417_26370 0.36 -0.4 5,703,148 + PS417_26370 0.51 -2.6 5,703,149 - PS417_26370 0.51 -2.7 5,703,820 - +0.9 5,703,820 - -0.1 5,703,834 + +0.2 5,703,876 + +0.8 5,703,877 - -0.9 5,704,052 + PS417_26375 0.14 -0.2 5,704,052 + PS417_26375 0.14 -0.8 5,704,052 + PS417_26375 0.14 +0.3 5,704,052 + +4.4 5,704,052 + PS417_26375 0.14 +0.8 5,704,053 - PS417_26375 0.14 -0.0 5,704,053 - PS417_26375 0.14 -1.6 5,704,053 - PS417_26375 0.14 -2.9 5,704,056 + PS417_26375 0.14 -1.9 5,704,057 - PS417_26375 0.14 +0.3 5,704,167 + PS417_26375 0.23 -0.5 5,704,615 + PS417_26375 0.61 +0.3 5,704,616 - PS417_26375 0.61 -0.1 5,704,809 + PS417_26375 0.78 +1.3 5,704,810 - PS417_26375 0.78 -0.3
Or see this region's nucleotide sequence