Strain Fitness in Pseudomonas simiae WCS417 around PS417_00260

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00245 and PS417_00250 overlap by 4 nucleotidesPS417_00250 and PS417_00255 are separated by 35 nucleotidesPS417_00255 and PS417_00260 are separated by 194 nucleotidesPS417_00260 and PS417_00265 are separated by 2 nucleotides PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230 _00245 PS417_00250: PS417_00250 - DNA-binding protein, at 49,227 to 49,502 _00250 PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741 _00255 PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688 _00260 PS417_00265: PS417_00265 - GMC family oxidoreductase, at 50,691 to 52,475 _00265 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.949 kb on + strand, within PS417_00245at 48.950 kb on - strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.015 kb on + strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strandat 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.247 kb on + strandat 49.250 kb on + strandat 49.500 kb on + strandat 49.539 kb on + strandat 49.540 kb on - strandat 49.540 kb on - strandat 49.800 kb on + strandat 49.839 kb on + strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.891 kb on + strandat 49.892 kb on - strandat 49.892 kb on - strandat 50.104 kb on + strand, within PS417_00260at 50.104 kb on + strand, within PS417_00260at 50.105 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.687 kb on - strandat 50.687 kb on - strandat 50.729 kb on - strandat 50.810 kb on + strandat 50.810 kb on + strandat 50.810 kb on + strandat 50.823 kb on + strandat 50.839 kb on - strandat 50.865 kb on + strandat 50.865 kb on + strandat 51.061 kb on - strand, within PS417_00265at 51.126 kb on + strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.197 kb on - strand, within PS417_00265at 51.339 kb on + strand, within PS417_00265at 51.339 kb on + strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.372 kb on + strand, within PS417_00265at 51.373 kb on - strand, within PS417_00265at 51.441 kb on + strand, within PS417_00265at 51.441 kb on + strand, within PS417_00265at 51.442 kb on - strand, within PS417_00265at 51.442 kb on - strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.579 kb on + strand, within PS417_00265at 51.579 kb on + strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
remove
48,949 + PS417_00245 0.86 -0.9
48,950 - PS417_00245 0.86 -2.6
49,009 + PS417_00245 0.89 +0.1
49,009 + PS417_00245 0.89 +2.5
49,009 + PS417_00245 0.89 +0.4
49,010 - PS417_00245 0.89 +1.0
49,010 - PS417_00245 0.89 -1.2
49,010 - PS417_00245 0.89 -0.6
49,010 - PS417_00245 0.89 +0.5
49,015 + PS417_00245 0.89 -0.0
49,016 - PS417_00245 0.90 +1.1
49,016 - PS417_00245 0.90 -3.2
49,017 + PS417_00245 0.90 +1.3
49,017 + PS417_00245 0.90 +0.5
49,017 + PS417_00245 0.90 +0.4
49,017 + PS417_00245 0.90 +2.1
49,017 + PS417_00245 0.90 +0.6
49,017 + PS417_00245 0.90 +1.0
49,017 + -0.2
49,017 + PS417_00245 0.90 -0.1
49,017 + PS417_00245 0.90 +0.5
49,018 - PS417_00245 0.90 -3.5
49,018 - PS417_00245 0.90 -0.6
49,018 - PS417_00245 0.90 +0.7
49,018 - PS417_00245 0.90 -1.1
49,018 - PS417_00245 0.90 +2.7
49,247 + -2.7
49,250 + -1.8
49,500 + +0.3
49,539 + +1.0
49,540 - +3.3
49,540 - -2.2
49,800 + +1.0
49,839 + +1.5
49,840 - +1.5
49,840 - -1.2
49,840 - -0.5
49,891 + -0.2
49,892 - +2.7
49,892 - +1.0
50,104 + PS417_00260 0.22 -1.0
50,104 + PS417_00260 0.22 -1.4
50,105 - PS417_00260 0.22 -0.3
50,219 - PS417_00260 0.38 -2.1
50,219 - PS417_00260 0.38 -3.3
50,436 - PS417_00260 0.66 +0.0
50,436 - PS417_00260 0.66 -1.0
50,436 - PS417_00260 0.66 -1.1
50,436 - PS417_00260 0.66 +0.7
50,436 - PS417_00260 0.66 -0.1
50,436 - PS417_00260 0.66 -0.5
50,436 - PS417_00260 0.66 -0.2
50,687 - +0.3
50,687 - -1.5
50,729 - -0.1
50,810 + -1.4
50,810 + -2.5
50,810 + +0.3
50,823 + -3.2
50,839 - -1.7
50,865 + +0.8
50,865 + +0.5
51,061 - PS417_00265 0.21 +1.2
51,126 + PS417_00265 0.24 -2.5
51,127 - PS417_00265 0.24 +0.8
51,127 - PS417_00265 0.24 -3.1
51,127 - PS417_00265 0.24 -1.9
51,127 - PS417_00265 0.24 -0.6
51,197 - PS417_00265 0.28 -1.5
51,339 + PS417_00265 0.36 -1.5
51,339 + PS417_00265 0.36 -1.0
51,340 - PS417_00265 0.36 -0.3
51,340 - PS417_00265 0.36 +1.6
51,340 - PS417_00265 0.36 -1.7
51,340 - PS417_00265 0.36 -2.4
51,372 + PS417_00265 0.38 -0.7
51,373 - PS417_00265 0.38 +0.0
51,441 + PS417_00265 0.42 +1.0
51,441 + PS417_00265 0.42 -0.8
51,442 - PS417_00265 0.42 -0.4
51,442 - PS417_00265 0.42 +0.1
51,447 + PS417_00265 0.42 +0.1
51,447 + PS417_00265 0.42 -0.3
51,447 + PS417_00265 0.42 -1.0
51,447 + PS417_00265 0.42 +0.9
51,448 - PS417_00265 0.42 +1.9
51,448 - PS417_00265 0.42 -1.2
51,448 - PS417_00265 0.42 +1.6
51,448 - PS417_00265 0.42 -1.7
51,448 - PS417_00265 0.42 -3.1
51,579 + PS417_00265 0.50 +1.2
51,579 + PS417_00265 0.50 -2.1
51,580 - PS417_00265 0.50 -2.4
51,580 - PS417_00265 0.50 -2.7
51,580 - PS417_00265 0.50 -0.2
51,580 - PS417_00265 0.50 +0.0

Or see this region's nucleotide sequence