Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26080 and PS417_26085 are separated by 63 nucleotides PS417_26085 and PS417_26095 are separated by 302 nucleotides
PS417_26080: PS417_26080 - TonB-dependent receptor, at 5,637,216 to 5,639,645
_26080
PS417_26085: PS417_26085 - peptidase, at 5,639,709 to 5,640,812
_26085
PS417_26095: PS417_26095 - ornithine cyclodeaminase, at 5,641,115 to 5,642,143
_26095
Position (kb) 5639
5640
5641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5638.746 kb on + strand, within PS417_26080 at 5638.750 kb on - strand, within PS417_26080 at 5638.755 kb on + strand, within PS417_26080 at 5638.785 kb on + strand, within PS417_26080 at 5638.785 kb on + strand, within PS417_26080 at 5638.863 kb on - strand, within PS417_26080 at 5638.866 kb on + strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.935 kb on + strand, within PS417_26080 at 5638.936 kb on - strand, within PS417_26080 at 5638.936 kb on - strand, within PS417_26080 at 5638.963 kb on - strand, within PS417_26080 at 5639.092 kb on + strand, within PS417_26080 at 5639.109 kb on + strand, within PS417_26080 at 5639.257 kb on - strand, within PS417_26080 at 5639.350 kb on - strand, within PS417_26080 at 5639.350 kb on - strand, within PS417_26080 at 5639.404 kb on - strand at 5639.460 kb on + strand at 5639.460 kb on + strand at 5639.461 kb on - strand at 5639.461 kb on - strand at 5639.461 kb on - strand at 5639.487 kb on + strand at 5639.488 kb on - strand at 5639.488 kb on - strand at 5639.565 kb on + strand at 5639.566 kb on - strand at 5639.590 kb on - strand at 5639.590 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.634 kb on + strand at 5639.635 kb on - strand at 5639.774 kb on - strand at 5639.862 kb on + strand, within PS417_26085 at 5639.946 kb on + strand, within PS417_26085 at 5639.946 kb on + strand, within PS417_26085 at 5640.207 kb on + strand, within PS417_26085 at 5640.208 kb on - strand, within PS417_26085 at 5640.208 kb on - strand, within PS417_26085 at 5640.414 kb on + strand, within PS417_26085 at 5640.654 kb on + strand, within PS417_26085 at 5640.655 kb on - strand, within PS417_26085 at 5640.774 kb on + strand at 5640.774 kb on + strand at 5640.775 kb on - strand at 5640.817 kb on + strand at 5640.818 kb on - strand at 5640.840 kb on + strand at 5640.840 kb on + strand at 5640.840 kb on + strand at 5640.841 kb on - strand at 5640.841 kb on - strand at 5640.841 kb on - strand at 5640.999 kb on + strand at 5640.999 kb on + strand at 5641.062 kb on - strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.131 kb on - strand at 5641.131 kb on - strand at 5641.131 kb on - strand at 5641.290 kb on - strand, within PS417_26095 at 5641.290 kb on - strand, within PS417_26095 at 5641.338 kb on - strand, within PS417_26095 at 5641.377 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.712 kb on - strand, within PS417_26095
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,638,746 + PS417_26080 0.63 -0.1 5,638,750 - PS417_26080 0.63 -1.4 5,638,755 + PS417_26080 0.63 +0.3 5,638,785 + PS417_26080 0.65 -0.3 5,638,785 + PS417_26080 0.65 +1.4 5,638,863 - PS417_26080 0.68 +1.1 5,638,866 + PS417_26080 0.68 +0.0 5,638,867 - PS417_26080 0.68 +1.6 5,638,867 - PS417_26080 0.68 -3.5 5,638,867 - PS417_26080 0.68 +0.9 5,638,867 - PS417_26080 0.68 +0.6 5,638,867 - +1.4 5,638,867 - PS417_26080 0.68 +0.4 5,638,867 - PS417_26080 0.68 +1.4 5,638,935 + PS417_26080 0.71 +0.6 5,638,936 - PS417_26080 0.71 +3.0 5,638,936 - PS417_26080 0.71 +0.1 5,638,963 - PS417_26080 0.72 -0.2 5,639,092 + PS417_26080 0.77 +0.3 5,639,109 + PS417_26080 0.78 -1.2 5,639,257 - PS417_26080 0.84 -0.7 5,639,350 - PS417_26080 0.88 -0.8 5,639,350 - PS417_26080 0.88 -0.8 5,639,404 - +0.2 5,639,460 + -0.8 5,639,460 + +1.3 5,639,461 - +2.6 5,639,461 - +0.8 5,639,461 - -1.0 5,639,487 + +0.1 5,639,488 - +0.6 5,639,488 - +0.8 5,639,565 + +3.8 5,639,566 - -0.8 5,639,590 - +0.2 5,639,590 - +0.1 5,639,596 - +2.7 5,639,596 - -0.1 5,639,596 - -1.2 5,639,596 - +0.3 5,639,634 + -1.7 5,639,635 - -0.1 5,639,774 - +1.3 5,639,862 + PS417_26085 0.14 +0.1 5,639,946 + PS417_26085 0.21 +1.8 5,639,946 + PS417_26085 0.21 +0.2 5,640,207 + PS417_26085 0.45 -2.0 5,640,208 - PS417_26085 0.45 -0.0 5,640,208 - PS417_26085 0.45 -1.4 5,640,414 + PS417_26085 0.64 -1.1 5,640,654 + PS417_26085 0.86 +0.4 5,640,655 - PS417_26085 0.86 +1.8 5,640,774 + +1.1 5,640,774 + +2.8 5,640,775 - +0.4 5,640,817 + +0.9 5,640,818 - -0.0 5,640,840 + -0.3 5,640,840 + -2.4 5,640,840 + -0.0 5,640,841 - -2.9 5,640,841 - -1.6 5,640,841 - +0.1 5,640,999 + +0.2 5,640,999 + -0.3 5,641,062 - +0.7 5,641,130 + -2.1 5,641,130 + +1.2 5,641,130 + -1.9 5,641,130 + +1.4 5,641,131 - +0.2 5,641,131 - +1.5 5,641,131 - +1.8 5,641,290 - PS417_26095 0.17 -0.8 5,641,290 - PS417_26095 0.17 +1.4 5,641,338 - PS417_26095 0.22 +0.7 5,641,377 + PS417_26095 0.25 +0.5 5,641,711 + PS417_26095 0.58 -1.0 5,641,711 + PS417_26095 0.58 +1.2 5,641,712 - PS417_26095 0.58 +0.7
Or see this region's nucleotide sequence