Strain Fitness in Pseudomonas simiae WCS417 around PS417_25070

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25065 and PS417_25070 overlap by 1 nucleotidesPS417_25070 and PS417_25075 overlap by 16 nucleotidesPS417_25075 and PS417_25080 are separated by 74 nucleotides PS417_25065: PS417_25065 - hypothetical protein, at 5,435,434 to 5,436,585 _25065 PS417_25070: PS417_25070 - hypothetical protein, at 5,436,585 to 5,437,670 _25070 PS417_25075: PS417_25075 - hypothetical protein, at 5,437,655 to 5,438,221 _25075 PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393 _25080 Position (kb) 5436 5437 5438Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5435.591 kb on - strand, within PS417_25065at 5435.599 kb on + strand, within PS417_25065at 5435.599 kb on + strand, within PS417_25065at 5435.683 kb on - strand, within PS417_25065at 5435.683 kb on - strand, within PS417_25065at 5435.683 kb on - strand, within PS417_25065at 5435.683 kb on - strand, within PS417_25065at 5435.702 kb on + strand, within PS417_25065at 5435.703 kb on - strand, within PS417_25065at 5435.703 kb on - strand, within PS417_25065at 5435.755 kb on + strand, within PS417_25065at 5435.756 kb on - strand, within PS417_25065at 5435.756 kb on - strand, within PS417_25065at 5435.756 kb on - strand, within PS417_25065at 5435.805 kb on - strand, within PS417_25065at 5435.805 kb on - strand, within PS417_25065at 5435.836 kb on + strand, within PS417_25065at 5435.918 kb on + strand, within PS417_25065at 5435.919 kb on - strand, within PS417_25065at 5435.919 kb on - strand, within PS417_25065at 5436.021 kb on + strand, within PS417_25065at 5436.022 kb on - strand, within PS417_25065at 5436.034 kb on + strand, within PS417_25065at 5436.034 kb on + strand, within PS417_25065at 5436.098 kb on + strand, within PS417_25065at 5436.130 kb on - strand, within PS417_25065at 5436.176 kb on + strand, within PS417_25065at 5436.298 kb on + strand, within PS417_25065at 5436.298 kb on + strand, within PS417_25065at 5436.299 kb on - strand, within PS417_25065at 5436.299 kb on - strand, within PS417_25065at 5436.372 kb on + strand, within PS417_25065at 5436.373 kb on - strand, within PS417_25065at 5436.373 kb on - strand, within PS417_25065at 5436.374 kb on + strand, within PS417_25065at 5436.375 kb on - strand, within PS417_25065at 5436.460 kb on - strand, within PS417_25065at 5436.460 kb on - strand, within PS417_25065at 5436.494 kb on + strandat 5436.495 kb on - strandat 5436.549 kb on - strandat 5436.587 kb on - strandat 5436.602 kb on - strandat 5436.736 kb on + strand, within PS417_25070at 5436.736 kb on + strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.749 kb on - strand, within PS417_25070at 5436.773 kb on - strand, within PS417_25070at 5436.881 kb on - strand, within PS417_25070at 5436.881 kb on - strand, within PS417_25070at 5436.884 kb on - strand, within PS417_25070at 5436.884 kb on - strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.925 kb on - strand, within PS417_25070at 5436.925 kb on - strand, within PS417_25070at 5436.925 kb on - strandat 5436.925 kb on - strand, within PS417_25070at 5437.001 kb on + strand, within PS417_25070at 5437.001 kb on + strand, within PS417_25070at 5437.002 kb on - strand, within PS417_25070at 5437.002 kb on - strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.030 kb on - strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.173 kb on - strand, within PS417_25070at 5437.250 kb on - strand, within PS417_25070at 5437.250 kb on - strand, within PS417_25070at 5437.259 kb on + strand, within PS417_25070at 5437.300 kb on - strand, within PS417_25070at 5437.300 kb on - strand, within PS417_25070at 5437.345 kb on + strandat 5437.346 kb on - strand, within PS417_25070at 5437.379 kb on + strandat 5437.380 kb on - strand, within PS417_25070at 5437.401 kb on + strand, within PS417_25070at 5437.445 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.548 kb on + strand, within PS417_25070at 5437.650 kb on + strandat 5437.656 kb on + strandat 5437.656 kb on + strandat 5437.657 kb on - strandat 5437.739 kb on + strand, within PS417_25075at 5437.739 kb on + strandat 5437.740 kb on - strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.754 kb on + strand, within PS417_25075at 5437.855 kb on + strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5438.017 kb on - strandat 5438.221 kb on + strandat 5438.221 kb on + strandat 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.493 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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5,435,591 - PS417_25065 0.14 +1.6
5,435,599 + PS417_25065 0.14 -1.4
5,435,599 + PS417_25065 0.14 -0.5
5,435,683 - PS417_25065 0.22 -5.2
5,435,683 - PS417_25065 0.22 -1.3
5,435,683 - PS417_25065 0.22 +0.2
5,435,683 - PS417_25065 0.22 -0.8
5,435,702 + PS417_25065 0.23 -1.7
5,435,703 - PS417_25065 0.23 -0.2
5,435,703 - PS417_25065 0.23 +0.3
5,435,755 + PS417_25065 0.28 -0.5
5,435,756 - PS417_25065 0.28 -0.2
5,435,756 - PS417_25065 0.28 +0.7
5,435,756 - PS417_25065 0.28 +0.2
5,435,805 - PS417_25065 0.32 -2.6
5,435,805 - PS417_25065 0.32 -2.6
5,435,836 + PS417_25065 0.35 +0.5
5,435,918 + PS417_25065 0.42 +0.3
5,435,919 - PS417_25065 0.42 -0.8
5,435,919 - PS417_25065 0.42 +0.2
5,436,021 + PS417_25065 0.51 +0.7
5,436,022 - PS417_25065 0.51 -0.8
5,436,034 + PS417_25065 0.52 -0.5
5,436,034 + PS417_25065 0.52 +0.6
5,436,098 + PS417_25065 0.58 +2.8
5,436,130 - PS417_25065 0.60 -0.5
5,436,176 + PS417_25065 0.64 -1.3
5,436,298 + PS417_25065 0.75 -0.3
5,436,298 + PS417_25065 0.75 +0.7
5,436,299 - PS417_25065 0.75 +0.1
5,436,299 - PS417_25065 0.75 -1.9
5,436,372 + PS417_25065 0.81 +1.1
5,436,373 - PS417_25065 0.82 -0.9
5,436,373 - PS417_25065 0.82 +0.1
5,436,374 + PS417_25065 0.82 -0.6
5,436,375 - PS417_25065 0.82 +0.2
5,436,460 - PS417_25065 0.89 +0.1
5,436,460 - PS417_25065 0.89 +1.0
5,436,494 + -0.9
5,436,495 - +0.7
5,436,549 - -0.5
5,436,587 - +0.6
5,436,602 - -2.4
5,436,736 + PS417_25070 0.14 +1.1
5,436,736 + PS417_25070 0.14 -0.2
5,436,737 - PS417_25070 0.14 -3.0
5,436,737 - PS417_25070 0.14 +1.8
5,436,737 - PS417_25070 0.14 +1.5
5,436,749 - PS417_25070 0.15 +3.2
5,436,773 - PS417_25070 0.17 +0.7
5,436,881 - PS417_25070 0.27 -0.4
5,436,881 - PS417_25070 0.27 +0.2
5,436,884 - PS417_25070 0.28 -1.8
5,436,884 - PS417_25070 0.28 -2.7
5,436,924 + PS417_25070 0.31 -0.5
5,436,924 + PS417_25070 0.31 +0.6
5,436,924 + PS417_25070 0.31 +0.2
5,436,924 + PS417_25070 0.31 +1.2
5,436,924 + PS417_25070 0.31 +1.2
5,436,924 + PS417_25070 0.31 -3.0
5,436,925 - PS417_25070 0.31 +0.7
5,436,925 - PS417_25070 0.31 -0.2
5,436,925 - +0.8
5,436,925 - PS417_25070 0.31 +2.9
5,437,001 + PS417_25070 0.38 +1.2
5,437,001 + PS417_25070 0.38 -3.2
5,437,002 - PS417_25070 0.38 +1.0
5,437,002 - PS417_25070 0.38 -0.9
5,437,029 + PS417_25070 0.41 +1.1
5,437,029 + PS417_25070 0.41 +0.9
5,437,029 + PS417_25070 0.41 -1.6
5,437,029 + PS417_25070 0.41 -1.4
5,437,029 + PS417_25070 0.41 +1.0
5,437,030 - PS417_25070 0.41 +2.1
5,437,032 + PS417_25070 0.41 -0.4
5,437,032 + PS417_25070 0.41 +2.1
5,437,032 + PS417_25070 0.41 -0.4
5,437,173 - PS417_25070 0.54 -2.9
5,437,250 - PS417_25070 0.61 +0.3
5,437,250 - PS417_25070 0.61 -2.0
5,437,259 + PS417_25070 0.62 +0.1
5,437,300 - PS417_25070 0.66 -1.0
5,437,300 - PS417_25070 0.66 -0.4
5,437,345 + -0.2
5,437,346 - PS417_25070 0.70 +2.3
5,437,379 + -0.2
5,437,380 - PS417_25070 0.73 -2.3
5,437,401 + PS417_25070 0.75 -0.4
5,437,445 - PS417_25070 0.79 -1.4
5,437,504 - PS417_25070 0.85 -0.5
5,437,504 - PS417_25070 0.85 +1.1
5,437,548 + PS417_25070 0.89 +0.4
5,437,650 + +0.1
5,437,656 + +1.3
5,437,656 + +0.8
5,437,657 - -0.3
5,437,739 + PS417_25075 0.15 +0.5
5,437,739 + +2.8
5,437,740 - PS417_25075 0.15 -1.5
5,437,741 + PS417_25075 0.15 +0.1
5,437,741 + PS417_25075 0.15 -2.7
5,437,741 + PS417_25075 0.15 +0.8
5,437,741 + PS417_25075 0.15 -1.0
5,437,742 - PS417_25075 0.15 +1.0
5,437,742 - PS417_25075 0.15 -0.3
5,437,742 - PS417_25075 0.15 +0.1
5,437,742 - PS417_25075 0.15 -1.5
5,437,742 - PS417_25075 0.15 -1.6
5,437,742 - PS417_25075 0.15 +1.0
5,437,742 - PS417_25075 0.15 -0.2
5,437,754 + PS417_25075 0.17 -0.5
5,437,855 + PS417_25075 0.35 +0.1
5,437,856 - PS417_25075 0.35 +1.0
5,437,856 - PS417_25075 0.35 -0.6
5,437,856 - PS417_25075 0.35 -2.5
5,438,017 - +2.2
5,438,221 + -0.5
5,438,221 + +0.0
5,438,492 + PS417_25080 0.18 -1.9
5,438,492 + PS417_25080 0.18 +1.0
5,438,492 + PS417_25080 0.18 +1.8
5,438,492 + PS417_25080 0.18 -4.0
5,438,493 - PS417_25080 0.18 -0.1
5,438,573 - PS417_25080 0.25 +1.2
5,438,573 - PS417_25080 0.25 +0.1

Or see this region's nucleotide sequence