Strain Fitness in Pseudomonas simiae WCS417 around PS417_24890

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
5,395,809	+		PS417_24880	0.53	+0.2
5,395,810	-		PS417_24880	0.53	-0.1
5,395,983	+		PS417_24880	0.70	+0.5
5,396,011	+		PS417_24880	0.73	-2.5
5,396,012	-		PS417_24880	0.73	+0.0
5,396,012	-		PS417_24880	0.73	+1.5
5,396,012	-		PS417_24880	0.73	+0.5
5,396,012	-		PS417_24880	0.73	-0.5
5,396,405	+		PS417_24885	0.28	+1.3
5,396,405	+		PS417_24885	0.28	+0.7
5,396,446	+		PS417_24885	0.45	+1.7
5,396,446	+		PS417_24885	0.45	+1.5
5,396,446	+		PS417_24885	0.45	-2.5
5,396,447	-		PS417_24885	0.45	+0.4
5,396,447	-		PS417_24885	0.45	-1.3
5,396,558	+				+1.1
5,396,586	+				+1.0
5,396,668	+				-0.3
5,396,668	+				-4.0
5,396,668	+				+1.4
5,396,668	+				+0.4
5,396,669	-				-0.8
5,396,672	+				-1.6
5,396,672	+				+0.6
5,396,672	+				-0.8
5,396,672	+				+1.0
5,396,672	+				+0.7
5,396,672	+				+0.6
5,396,731	-				-0.0
5,396,759	+				-0.6
5,396,759	+				-0.3
5,396,760	-				-3.2
5,396,825	+		PS417_24890	0.12	+0.3
5,396,841	-		PS417_24890	0.15	+3.3
5,396,875	+		PS417_24890	0.20	+1.6
5,396,891	+		PS417_24890	0.22	+1.5
5,397,018	+		PS417_24890	0.42	+1.3
5,397,027	-		PS417_24890	0.44	+0.7
5,397,027	-		PS417_24890	0.44	-1.0
5,397,027	-		PS417_24890	0.44	-0.5
5,397,075	+		PS417_24890	0.51	+0.3
5,397,107	+		PS417_24890	0.56	+3.9
5,397,123	+		PS417_24890	0.58	-0.5
5,397,184	-		PS417_24890	0.68	+1.7
5,397,246	+		PS417_24890	0.78	-2.0
5,397,342	-				-1.1
5,397,457	-				+0.2
5,397,564	-		PS417_24895	0.42	-1.9
5,397,575	+		PS417_24895	0.48	-2.8
5,397,725	+				+1.4
5,397,725	+				-1.0
5,397,726	-				-0.1
5,397,730	-				-0.3
5,397,730	-				+0.4
5,397,781	+				+0.1
5,397,781	+				-0.5
5,397,782	-				+0.7
5,397,842	+				+0.3
5,397,842	+				-3.2
5,397,842	+				+3.2
5,397,843	-				+0.2
5,397,843	-				-1.0
5,397,843	-				-1.0
5,397,843	-				-3.4
5,397,864	+				+0.1
5,397,902	+				+0.0
5,397,902	+				-0.9
5,397,903	-				-0.9
5,397,984	-		PS417_24900	0.13	-3.8
5,398,055	+		PS417_24900	0.23	+1.5
5,398,055	+		PS417_24900	0.23	+1.9
5,398,056	-		PS417_24900	0.24	-0.1
5,398,056	-		PS417_24900	0.24	-1.7
5,398,056	-		PS417_24900	0.24	-0.0
5,398,056	-		PS417_24900	0.24	+0.5
5,398,058	+		PS417_24900	0.24	-0.7
5,398,058	+		PS417_24900	0.24	+0.7
5,398,058	+		PS417_24900	0.24	-0.5
5,398,059	-		PS417_24900	0.24	-0.3
5,398,059	-		PS417_24900	0.24	+0.1
5,398,059	-		PS417_24900	0.24	+0.7
5,398,059	-		PS417_24900	0.24	+0.2
5,398,099	+		PS417_24900	0.30	-0.1
5,398,099	+		PS417_24900	0.30	+2.2
5,398,100	-		PS417_24900	0.30	+1.0
5,398,103	-		PS417_24900	0.31	+1.4
5,398,108	+				-0.5
5,398,109	-		PS417_24900	0.32	-2.0
5,398,151	-		PS417_24900	0.38	+1.7
5,398,208	-		PS417_24900	0.46	-2.2
5,398,241	+		PS417_24900	0.51	+1.3
5,398,241	+		PS417_24900	0.51	-2.2
5,398,241	+		PS417_24900	0.51	+0.5
5,398,242	-				+0.2
5,398,332	-		PS417_24900	0.65	-1.8
5,398,332	-		PS417_24900	0.65	+0.2
5,398,369	-		PS417_24900	0.70	+0.2
5,398,369	-		PS417_24900	0.70	-2.7