Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24360 and PS417_24365 overlap by 4 nucleotides PS417_24365 and PS417_24370 overlap by 4 nucleotides PS417_24370 and PS417_24375 are separated by 96 nucleotides
PS417_24360: PS417_24360 - aldehyde oxidase, at 5,287,235 to 5,289,418
_24360
PS417_24365: PS417_24365 - FAD-binding molybdopterin dehydrogenase, at 5,289,415 to 5,290,404
_24365
PS417_24370: PS417_24370 - (2Fe-2S)-binding protein, at 5,290,401 to 5,290,907
_24370
PS417_24375: PS417_24375 - hypothetical protein, at 5,291,004 to 5,291,450
_24375
Position (kb) 5289
5290
5291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5288.458 kb on - strand, within PS417_24360 at 5288.781 kb on + strand, within PS417_24360 at 5288.781 kb on + strand, within PS417_24360 at 5288.782 kb on - strand, within PS417_24360 at 5288.782 kb on - strand, within PS417_24360 at 5288.821 kb on + strand, within PS417_24360 at 5288.844 kb on + strand, within PS417_24360 at 5289.135 kb on + strand, within PS417_24360 at 5289.702 kb on - strand, within PS417_24365 at 5289.728 kb on + strand, within PS417_24365 at 5289.816 kb on + strand, within PS417_24365 at 5290.044 kb on - strand, within PS417_24365 at 5290.044 kb on - strand, within PS417_24365 at 5290.049 kb on + strand, within PS417_24365 at 5290.052 kb on + strand at 5290.053 kb on - strand, within PS417_24365 at 5290.260 kb on + strand, within PS417_24365 at 5290.261 kb on - strand, within PS417_24365 at 5290.369 kb on + strand at 5290.369 kb on + strand at 5290.370 kb on - strand at 5290.370 kb on - strand at 5290.388 kb on + strand at 5290.388 kb on + strand at 5290.450 kb on + strand at 5290.450 kb on + strand at 5290.451 kb on - strand at 5290.451 kb on - strand at 5290.854 kb on + strand, within PS417_24370 at 5290.893 kb on - strand at 5290.908 kb on - strand at 5290.929 kb on - strand at 5291.012 kb on + strand at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.108 kb on - strand, within PS417_24375 at 5291.108 kb on - strand, within PS417_24375 at 5291.114 kb on - strand, within PS417_24375 at 5291.286 kb on - strand, within PS417_24375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,288,458 - PS417_24360 0.56 +1.8 5,288,781 + PS417_24360 0.71 +1.4 5,288,781 + PS417_24360 0.71 +0.1 5,288,782 - PS417_24360 0.71 +0.9 5,288,782 - PS417_24360 0.71 +2.5 5,288,821 + PS417_24360 0.73 -1.7 5,288,844 + PS417_24360 0.74 -0.7 5,289,135 + PS417_24360 0.87 -0.4 5,289,702 - PS417_24365 0.29 -0.2 5,289,728 + PS417_24365 0.32 -0.4 5,289,816 + PS417_24365 0.41 -1.9 5,290,044 - PS417_24365 0.64 -3.6 5,290,044 - PS417_24365 0.64 +0.5 5,290,049 + PS417_24365 0.64 +0.1 5,290,052 + +3.4 5,290,053 - PS417_24365 0.64 -1.7 5,290,260 + PS417_24365 0.85 -1.0 5,290,261 - PS417_24365 0.85 -1.4 5,290,369 + -0.1 5,290,369 + +0.4 5,290,370 - +0.7 5,290,370 - +1.8 5,290,388 + +0.3 5,290,388 + -1.2 5,290,450 + -0.1 5,290,450 + +1.8 5,290,451 - +0.2 5,290,451 - +1.2 5,290,854 + PS417_24370 0.89 +0.5 5,290,893 - +1.1 5,290,908 - -3.4 5,290,929 - -0.8 5,291,012 + -1.4 5,291,107 + PS417_24375 0.23 -0.6 5,291,107 + PS417_24375 0.23 -1.2 5,291,107 + PS417_24375 0.23 -3.4 5,291,107 + PS417_24375 0.23 -2.4 5,291,107 + PS417_24375 0.23 -0.0 5,291,107 + PS417_24375 0.23 -1.4 5,291,107 + PS417_24375 0.23 +1.3 5,291,107 + PS417_24375 0.23 +2.2 5,291,107 + PS417_24375 0.23 +0.8 5,291,107 + PS417_24375 0.23 +1.5 5,291,108 - PS417_24375 0.23 -4.1 5,291,108 - PS417_24375 0.23 +1.1 5,291,114 - PS417_24375 0.25 +1.1 5,291,286 - PS417_24375 0.63 -1.4
Or see this region's nucleotide sequence