Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24295 and PS417_24300 are separated by 174 nucleotides PS417_24300 and PS417_24305 are separated by 29 nucleotides PS417_24305 and PS417_24310 are separated by 35 nucleotides PS417_24310 and PS417_24315 are separated by 58 nucleotides
PS417_24295: PS417_24295 - carbon starvation protein A, at 5,272,755 to 5,274,821
_24295
PS417_24300: PS417_24300 - pilus assembly protein, at 5,274,996 to 5,275,364
_24300
PS417_24305: PS417_24305 - DNA repair protein RadA, at 5,275,394 to 5,276,761
_24305
PS417_24310: PS417_24310 - ankyrin, at 5,276,797 to 5,277,336
_24310
PS417_24315: PS417_24315 - catalase, at 5,277,395 to 5,278,936
_24315
Position (kb) 5275
5276
5277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5274.574 kb on + strand, within PS417_24295 at 5274.574 kb on + strand, within PS417_24295 at 5274.658 kb on + strand at 5274.658 kb on + strand at 5274.661 kb on + strand at 5274.662 kb on - strand at 5274.680 kb on - strand at 5274.680 kb on - strand at 5274.789 kb on + strand at 5274.807 kb on - strand at 5274.813 kb on - strand at 5274.910 kb on - strand at 5274.966 kb on - strand at 5275.109 kb on - strand, within PS417_24300 at 5275.123 kb on + strand, within PS417_24300 at 5275.124 kb on - strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.199 kb on + strand, within PS417_24300 at 5275.199 kb on + strand, within PS417_24300 at 5275.200 kb on - strand, within PS417_24300 at 5275.200 kb on - strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.351 kb on + strand at 5275.352 kb on - strand at 5275.352 kb on - strand at 5275.354 kb on + strand at 5275.354 kb on + strand at 5275.355 kb on - strand at 5275.355 kb on - strand at 5275.355 kb on - strand at 5275.846 kb on + strand, within PS417_24305 at 5275.847 kb on - strand, within PS417_24305 at 5276.050 kb on - strand, within PS417_24305 at 5276.063 kb on + strand, within PS417_24305 at 5276.064 kb on - strand, within PS417_24305 at 5276.155 kb on - strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.395 kb on - strand, within PS417_24305 at 5276.435 kb on + strand, within PS417_24305 at 5276.436 kb on - strand, within PS417_24305 at 5276.689 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.793 kb on + strand at 5276.794 kb on - strand at 5276.794 kb on - strand at 5276.934 kb on - strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.176 kb on + strand, within PS417_24310 at 5277.472 kb on - strand at 5277.489 kb on + strand at 5277.489 kb on + strand at 5277.723 kb on + strand, within PS417_24315 at 5277.724 kb on - strand, within PS417_24315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,274,574 + PS417_24295 0.88 +0.5 5,274,574 + PS417_24295 0.88 +0.5 5,274,658 + +1.1 5,274,658 + +1.3 5,274,661 + +0.6 5,274,662 - -3.0 5,274,680 - -0.7 5,274,680 - +4.6 5,274,789 + +3.0 5,274,807 - +1.9 5,274,813 - +0.8 5,274,910 - -0.9 5,274,966 - +3.2 5,275,109 - PS417_24300 0.31 +0.3 5,275,123 + PS417_24300 0.34 -0.3 5,275,124 - PS417_24300 0.35 -2.0 5,275,177 + PS417_24300 0.49 -2.2 5,275,177 + PS417_24300 0.49 -0.7 5,275,177 + PS417_24300 0.49 +0.4 5,275,177 + PS417_24300 0.49 -0.5 5,275,178 - PS417_24300 0.49 -0.8 5,275,178 - PS417_24300 0.49 +0.5 5,275,178 - PS417_24300 0.49 -0.4 5,275,199 + PS417_24300 0.55 +0.3 5,275,199 + PS417_24300 0.55 -0.8 5,275,200 - PS417_24300 0.55 -0.2 5,275,200 - PS417_24300 0.55 +0.8 5,275,201 + PS417_24300 0.56 -1.9 5,275,201 + PS417_24300 0.56 -1.6 5,275,201 + PS417_24300 0.56 -0.8 5,275,201 + PS417_24300 0.56 -2.1 5,275,201 + PS417_24300 0.56 -1.5 5,275,201 + PS417_24300 0.56 -2.2 5,275,351 + -1.5 5,275,352 - +0.3 5,275,352 - +0.1 5,275,354 + -1.0 5,275,354 + -1.1 5,275,355 - -2.4 5,275,355 - -0.2 5,275,355 - -0.1 5,275,846 + PS417_24305 0.33 -0.2 5,275,847 - PS417_24305 0.33 -2.4 5,276,050 - PS417_24305 0.48 -1.5 5,276,063 + PS417_24305 0.49 +0.9 5,276,064 - PS417_24305 0.49 +1.1 5,276,155 - PS417_24305 0.56 -1.0 5,276,394 + PS417_24305 0.73 +0.1 5,276,394 + PS417_24305 0.73 -1.9 5,276,394 + PS417_24305 0.73 -0.2 5,276,394 + PS417_24305 0.73 +0.3 5,276,394 + PS417_24305 0.73 +0.9 5,276,395 - PS417_24305 0.73 +0.0 5,276,435 + PS417_24305 0.76 -0.2 5,276,436 - PS417_24305 0.76 -1.1 5,276,689 + +1.8 5,276,739 + -0.1 5,276,739 + -1.1 5,276,739 + -2.3 5,276,739 + -0.4 5,276,739 + +1.3 5,276,793 + -0.7 5,276,794 - +0.4 5,276,794 - +0.5 5,276,934 - PS417_24310 0.25 -0.4 5,277,146 + PS417_24310 0.65 -1.0 5,277,146 + PS417_24310 0.65 +2.9 5,277,176 + PS417_24310 0.70 -0.2 5,277,472 - -1.1 5,277,489 + +0.4 5,277,489 + -1.0 5,277,723 + PS417_24315 0.21 +0.2 5,277,724 - PS417_24315 0.21 -0.1
Or see this region's nucleotide sequence