Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23595 and PS417_23600 are separated by 1 nucleotides PS417_23600 and PS417_23605 are separated by 12 nucleotides
PS417_23595: PS417_23595 - D-aminoacylase, at 5,102,630 to 5,104,093
_23595
PS417_23600: PS417_23600 - RpiR family transcriptional regulator, at 5,104,095 to 5,104,955
_23600
PS417_23605: PS417_23605 - permease DsdX, at 5,104,968 to 5,106,371
_23605
Position (kb) 5104
5105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5103.095 kb on + strand, within PS417_23595 at 5103.252 kb on + strand, within PS417_23595 at 5103.322 kb on + strand, within PS417_23595 at 5103.364 kb on + strand, within PS417_23595 at 5103.456 kb on + strand, within PS417_23595 at 5103.457 kb on - strand, within PS417_23595 at 5103.640 kb on + strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.662 kb on - strand, within PS417_23595 at 5104.029 kb on - strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.086 kb on + strand at 5104.087 kb on - strand at 5104.093 kb on + strand at 5104.257 kb on - strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.262 kb on + strand, within PS417_23600 at 5104.358 kb on - strand, within PS417_23600 at 5104.398 kb on - strand, within PS417_23600 at 5104.991 kb on - strand at 5105.066 kb on + strand at 5105.067 kb on - strand at 5105.453 kb on + strand, within PS417_23605 at 5105.622 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.797 kb on + strand, within PS417_23605 at 5105.798 kb on - strand, within PS417_23605 at 5105.798 kb on - strand, within PS417_23605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,103,095 + PS417_23595 0.32 -0.3 5,103,252 + PS417_23595 0.42 -0.1 5,103,322 + PS417_23595 0.47 -0.4 5,103,364 + PS417_23595 0.50 -2.2 5,103,456 + PS417_23595 0.56 +2.8 5,103,457 - PS417_23595 0.56 -0.4 5,103,640 + PS417_23595 0.69 +1.3 5,103,641 - PS417_23595 0.69 -0.0 5,103,641 - PS417_23595 0.69 -3.0 5,103,662 - PS417_23595 0.70 -0.5 5,104,029 - -0.3 5,104,032 + +1.0 5,104,032 + -1.3 5,104,032 + -0.7 5,104,032 + +1.3 5,104,032 + +0.9 5,104,086 + +2.4 5,104,087 - +0.4 5,104,093 + +0.6 5,104,257 - PS417_23600 0.19 -0.8 5,104,258 + PS417_23600 0.19 -1.1 5,104,258 + -1.0 5,104,258 + PS417_23600 0.19 +2.0 5,104,258 + PS417_23600 0.19 -1.2 5,104,258 + PS417_23600 0.19 +0.1 5,104,258 + PS417_23600 0.19 -0.2 5,104,259 - PS417_23600 0.19 -3.0 5,104,259 - PS417_23600 0.19 -0.2 5,104,259 - PS417_23600 0.19 +0.1 5,104,259 - PS417_23600 0.19 -3.9 5,104,262 + PS417_23600 0.19 +0.3 5,104,358 - PS417_23600 0.31 -0.5 5,104,398 - PS417_23600 0.35 -2.4 5,104,991 - +0.9 5,105,066 + -0.6 5,105,067 - -1.7 5,105,453 + PS417_23605 0.35 +1.3 5,105,622 - PS417_23605 0.47 -1.0 5,105,768 - PS417_23605 0.57 +0.5 5,105,768 - PS417_23605 0.57 -1.0 5,105,768 - PS417_23605 0.57 -0.2 5,105,797 + PS417_23605 0.59 -0.5 5,105,798 - PS417_23605 0.59 +0.3 5,105,798 - PS417_23605 0.59 +0.5
Or see this region's nucleotide sequence