Strain Fitness in Pseudomonas simiae WCS417 around PS417_22855

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22850 and PS417_22855 are separated by 137 nucleotidesPS417_22855 and PS417_22860 are separated by 60 nucleotidesPS417_22860 and PS417_22865 are separated by 136 nucleotides PS417_22850: PS417_22850 - virulence factor family protein, at 4,951,748 to 4,953,022 _22850 PS417_22855: PS417_22855 - ssDNA exonuclease RecJ, at 4,953,160 to 4,954,869 _22855 PS417_22860: PS417_22860 - hypothetical protein, at 4,954,930 to 4,955,472 _22860 PS417_22865: PS417_22865 - CoA-transferase, at 4,955,609 to 4,956,802 _22865 Position (kb) 4953 4954 4955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4952.561 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850at 4952.784 kb on + strand, within PS417_22850at 4953.025 kb on + strandat 4953.233 kb on + strandat 4953.752 kb on + strand, within PS417_22855at 4953.752 kb on + strand, within PS417_22855at 4954.033 kb on - strand, within PS417_22855at 4954.057 kb on - strand, within PS417_22855at 4954.178 kb on - strand, within PS417_22855at 4954.292 kb on + strand, within PS417_22855at 4954.293 kb on - strand, within PS417_22855at 4954.569 kb on - strand, within PS417_22855at 4954.656 kb on + strand, within PS417_22855at 4955.017 kb on + strand, within PS417_22860at 4955.017 kb on + strand, within PS417_22860at 4955.017 kb on + strand, within PS417_22860at 4955.018 kb on - strand, within PS417_22860at 4955.093 kb on - strand, within PS417_22860at 4955.169 kb on + strand, within PS417_22860at 4955.282 kb on - strand, within PS417_22860at 4955.282 kb on - strand, within PS417_22860at 4955.321 kb on + strand, within PS417_22860at 4955.322 kb on - strand, within PS417_22860at 4955.333 kb on + strand, within PS417_22860at 4955.409 kb on - strand, within PS417_22860at 4955.409 kb on - strand, within PS417_22860at 4955.563 kb on - strandat 4955.563 kb on - strandat 4955.567 kb on + strandat 4955.771 kb on + strand, within PS417_22865at 4955.771 kb on + strand, within PS417_22865at 4955.772 kb on - strand, within PS417_22865at 4955.772 kb on - strand, within PS417_22865

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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4,952,561 + PS417_22850 0.64 -2.6
4,952,696 + PS417_22850 0.74 +1.2
4,952,696 + PS417_22850 0.74 -3.1
4,952,696 + PS417_22850 0.74 -3.1
4,952,697 - PS417_22850 0.74 -2.9
4,952,697 - PS417_22850 0.74 -0.5
4,952,697 - PS417_22850 0.74 -3.9
4,952,741 - PS417_22850 0.78 -1.8
4,952,741 - PS417_22850 0.78 -2.0
4,952,741 - PS417_22850 0.78 -3.7
4,952,784 + PS417_22850 0.81 -1.4
4,953,025 + +0.6
4,953,233 + -0.9
4,953,752 + PS417_22855 0.35 +0.4
4,953,752 + PS417_22855 0.35 -2.4
4,954,033 - PS417_22855 0.51 -2.2
4,954,057 - PS417_22855 0.52 -0.5
4,954,178 - PS417_22855 0.60 -1.4
4,954,292 + PS417_22855 0.66 -0.8
4,954,293 - PS417_22855 0.66 +0.2
4,954,569 - PS417_22855 0.82 +0.7
4,954,656 + PS417_22855 0.87 -1.1
4,955,017 + PS417_22860 0.16 +0.2
4,955,017 + PS417_22860 0.16 -0.5
4,955,017 + PS417_22860 0.16 -0.9
4,955,018 - PS417_22860 0.16 -1.4
4,955,093 - PS417_22860 0.30 +0.8
4,955,169 + PS417_22860 0.44 +0.5
4,955,282 - PS417_22860 0.65 +0.1
4,955,282 - PS417_22860 0.65 -0.1
4,955,321 + PS417_22860 0.72 +0.1
4,955,322 - PS417_22860 0.72 +0.4
4,955,333 + PS417_22860 0.74 +0.8
4,955,409 - PS417_22860 0.88 -0.7
4,955,409 - PS417_22860 0.88 -1.4
4,955,563 - -0.8
4,955,563 - +0.5
4,955,567 + -0.1
4,955,771 + PS417_22865 0.14 -1.9
4,955,771 + PS417_22865 0.14 +0.5
4,955,772 - PS417_22865 0.14 -2.1
4,955,772 - PS417_22865 0.14 +0.2

Or see this region's nucleotide sequence