Strain Fitness in Pseudomonas simiae WCS417 around PS417_01920

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01915 and PS417_01920 are separated by 36 nucleotidesPS417_01920 and PS417_01925 are separated by 257 nucleotidesPS417_01925 and PS417_01930 are separated by 1 nucleotides PS417_01915: PS417_01915 - ATP-dependent protease ATP-binding subunit HslU, at 423,674 to 425,011 _01915 PS417_01920: PS417_01920 - ATP-dependent protease subunit HslV, at 425,048 to 425,578 _01920 PS417_01925: PS417_01925 - cell division protein, at 425,836 to 426,537 _01925 PS417_01930: PS417_01930 - arginyl-tRNA synthetase, at 426,539 to 428,275 _01930 Position (kb) 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1at 424.743 kb on + strand, within PS417_01915at 425.012 kb on - strandat 425.012 kb on - strandat 425.464 kb on - strand, within PS417_01920at 425.684 kb on + strandat 425.684 kb on + strandat 425.684 kb on + strandat 425.685 kb on - strandat 425.764 kb on + strandat 425.765 kb on - strandat 425.781 kb on - strandat 425.781 kb on - strandat 425.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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424,743 + PS417_01915 0.80 -2.5
425,012 - +0.8
425,012 - -1.0
425,464 - PS417_01920 0.78 -3.0
425,684 + -1.2
425,684 + -0.0
425,684 + -2.2
425,685 - +0.3
425,764 + -0.9
425,765 - -1.1
425,781 - +0.3
425,781 - -1.0
425,787 + -0.5

Or see this region's nucleotide sequence