Strain Fitness in Pseudomonas simiae WCS417 around PS417_17195

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
3,752,908	+		PS417_17185	0.67	-2.7
3,752,908	+		PS417_17185	0.67	+0.3
3,752,909	-		PS417_17185	0.67	+0.8
3,752,909	-		PS417_17185	0.67	+1.4
3,753,221	-				+0.5
3,753,244	+				-0.3
3,753,267	-				+0.3
3,753,267	-				+1.1
3,753,425	-		PS417_17190	0.29	+0.4
3,753,520	-		PS417_17190	0.49	+1.1
3,753,562	+		PS417_17190	0.58	+0.1
3,753,646	+		PS417_17190	0.76	+2.8
3,753,794	+				+0.8
3,753,795	-				-2.4
3,753,797	+				+0.6
3,753,798	-				-1.0
3,753,798	-				-0.9
3,753,798	-				-0.3
3,754,086	-				+2.7
3,754,093	+				-1.4
3,754,094	-				+0.7
3,754,094	-				-0.4
3,754,094	-				-1.3
3,754,094	-				-0.4
3,754,094	-				+1.8
3,754,235	+		PS417_17195	0.12	+1.3
3,754,236	-		PS417_17195	0.12	+0.9
3,754,236	-		PS417_17195	0.12	+1.9
3,754,236	-		PS417_17195	0.12	+0.2
3,754,251	+		PS417_17195	0.13	+0.9
3,754,257	-		PS417_17195	0.13	-1.3
3,754,263	+		PS417_17195	0.13	-1.5
3,754,263	+		PS417_17195	0.13	-1.6
3,754,319	+		PS417_17195	0.16	-2.3
3,754,320	-		PS417_17195	0.16	-1.3
3,754,320	-		PS417_17195	0.16	+0.8
3,754,321	+		PS417_17195	0.16	-0.1
3,754,321	+		PS417_17195	0.16	+0.3
3,754,321	+		PS417_17195	0.16	+1.0
3,754,322	-		PS417_17195	0.16	+1.7
3,754,322	-		PS417_17195	0.16	-3.3
3,754,350	-		PS417_17195	0.17	-2.4
3,754,350	-		PS417_17195	0.17	-0.2
3,754,362	-		PS417_17195	0.17	-1.8
3,754,427	-		PS417_17195	0.20	+0.2
3,754,436	+		PS417_17195	0.20	+0.3
3,754,514	+		PS417_17195	0.23	-0.8
3,754,539	+		PS417_17195	0.24	+2.0
3,754,880	+		PS417_17195	0.37	-1.1
3,754,881	-		PS417_17195	0.37	+1.4
3,754,901	+		PS417_17195	0.37	+0.3
3,754,902	-		PS417_17195	0.37	-2.4
3,754,902	-		PS417_17195	0.37	-0.7
3,755,220	-		PS417_17195	0.49	-2.6
3,755,256	-		PS417_17195	0.51	+1.3
3,755,256	-		PS417_17195	0.51	+2.1
3,755,293	-		PS417_17195	0.52	-1.1
3,755,293	-		PS417_17195	0.52	-0.5
3,755,541	-		PS417_17195	0.61	+0.5
3,755,570	+		PS417_17195	0.63	+1.6
3,755,573	+		PS417_17195	0.63	+0.7
3,755,573	+		PS417_17195	0.63	+0.4
3,755,653	+		PS417_17195	0.66	-1.9
3,755,654	-		PS417_17195	0.66	-0.3
3,755,654	-		PS417_17195	0.66	+1.9
3,755,660	+		PS417_17195	0.66	+0.3
3,755,660	+		PS417_17195	0.66	+1.5
3,755,661	-		PS417_17195	0.66	-2.2
3,755,693	+		PS417_17195	0.67	-0.0
3,755,693	+				-0.9
3,755,694	-		PS417_17195	0.67	+0.0
3,755,694	-		PS417_17195	0.67	-1.3
3,755,694	-		PS417_17195	0.67	+3.1
3,755,695	+		PS417_17195	0.67	+0.1
3,755,696	-		PS417_17195	0.67	+0.4
3,755,696	-		PS417_17195	0.67	-2.7
3,755,846	-		PS417_17195	0.73	-1.0
3,755,898	-		PS417_17195	0.75	-2.1
3,755,939	+		PS417_17195	0.76	+2.0
3,755,940	-		PS417_17195	0.76	+1.1
3,755,940	-		PS417_17195	0.76	-0.2
3,755,940	-		PS417_17195	0.76	-1.1
3,755,961	-		PS417_17195	0.77	-0.4
3,755,961	-		PS417_17195	0.77	+0.7
3,755,961	-		PS417_17195	0.77	+0.6
3,755,961	-		PS417_17195	0.77	+1.1
3,755,963	+		PS417_17195	0.77	-2.7
3,755,966	+		PS417_17195	0.77	-1.3
3,755,966	+		PS417_17195	0.77	+1.6
3,755,967	-		PS417_17195	0.77	+0.7
3,755,967	-		PS417_17195	0.77	+1.5
3,755,967	-		PS417_17195	0.77	+1.3
3,755,967	-		PS417_17195	0.77	-1.2
3,756,044	+		PS417_17195	0.80	+2.4
3,756,044	+		PS417_17195	0.80	+0.4
3,756,158	-		PS417_17195	0.85	-1.2
3,756,206	-		PS417_17195	0.86	-2.3
3,756,257	+		PS417_17195	0.88	+1.0
3,756,563	+				+2.3
3,756,564	-				-0.1
3,756,569	-				+1.9
3,756,794	+		PS417_17200	0.29	+2.2
3,756,795	-				+3.5
3,756,795	-		PS417_17200	0.29	+0.9
3,756,889	-		PS417_17200	0.42	-1.8
3,757,053	+		PS417_17200	0.63	+0.9
3,757,053	+		PS417_17200	0.63	+1.8
3,757,053	+				-0.7
3,757,053	+		PS417_17200	0.63	-1.4
3,757,148	-		PS417_17200	0.75	+2.6
3,757,223	+		PS417_17200	0.85	+2.1
3,757,252	+		PS417_17200	0.89	-0.1
3,757,253	-		PS417_17200	0.89	+2.6
3,757,431	+				+2.6
3,757,468	+				+0.3
3,757,468	+				+1.1
3,757,468	+				-1.8
3,757,469	-				-3.4
3,757,469	-				-2.8
3,757,552	-		PS417_17205	0.14	-0.1
3,757,552	-		PS417_17205	0.14	-1.6