Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01190 and PS417_01195 are separated by 115 nucleotides PS417_01195 and PS417_01200 are separated by 39 nucleotides PS417_01200 and PS417_01205 are separated by 104 nucleotides
PS417_01190: PS417_01190 - diguanylate phosphodiesterase, at 262,104 to 262,883
_01190
PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406
_01195
PS417_01200: PS417_01200 - phosphoesterase, at 263,446 to 264,246
_01200
PS417_01205: PS417_01205 - molecular chaperone Hsp33, at 264,351 to 265,253
_01205
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 262.465 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.469 kb on + strand, within PS417_01190 at 262.470 kb on - strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.473 kb on + strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.474 kb on - strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.523 kb on + strand, within PS417_01190 at 262.524 kb on - strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.575 kb on + strand, within PS417_01190 at 262.576 kb on - strand, within PS417_01190 at 262.649 kb on + strand, within PS417_01190 at 262.701 kb on + strand, within PS417_01190 at 262.888 kb on + strand at 262.889 kb on - strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.909 kb on + strand at 262.910 kb on - strand at 262.923 kb on + strand at 262.923 kb on + strand at 262.924 kb on - strand at 263.065 kb on + strand, within PS417_01195 at 263.066 kb on - strand at 263.257 kb on + strand, within PS417_01195 at 263.257 kb on + strand, within PS417_01195 at 263.539 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.859 kb on + strand, within PS417_01200 at 263.877 kb on + strand, within PS417_01200 at 263.878 kb on - strand, within PS417_01200 at 263.937 kb on + strand, within PS417_01200 at 263.944 kb on + strand, within PS417_01200 at 263.945 kb on - strand, within PS417_01200 at 264.058 kb on + strand, within PS417_01200 at 264.184 kb on + strand at 264.184 kb on + strand at 264.246 kb on + strand at 264.247 kb on - strand at 264.316 kb on + strand at 264.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 262,465 + PS417_01190 0.46 -0.3 262,469 + PS417_01190 0.47 -1.8 262,469 + PS417_01190 0.47 -0.8 262,469 + PS417_01190 0.47 +1.1 262,469 + PS417_01190 0.47 +1.4 262,469 + PS417_01190 0.47 +0.5 262,469 + PS417_01190 0.47 +1.2 262,469 + PS417_01190 0.47 +1.7 262,469 + PS417_01190 0.47 +0.8 262,469 + PS417_01190 0.47 -0.2 262,470 - PS417_01190 0.47 -0.4 262,473 + PS417_01190 0.47 -0.1 262,473 + PS417_01190 0.47 +0.1 262,474 - PS417_01190 0.47 -1.7 262,474 - PS417_01190 0.47 -2.2 262,474 - PS417_01190 0.47 +0.5 262,474 - PS417_01190 0.47 -0.3 262,523 + PS417_01190 0.54 +0.3 262,523 + PS417_01190 0.54 +0.7 262,523 + PS417_01190 0.54 -2.3 262,523 + PS417_01190 0.54 +1.6 262,523 + PS417_01190 0.54 +1.8 262,524 - PS417_01190 0.54 -2.3 262,575 + PS417_01190 0.60 +1.0 262,575 + PS417_01190 0.60 +0.2 262,576 - PS417_01190 0.61 -0.0 262,649 + PS417_01190 0.70 +1.3 262,701 + PS417_01190 0.77 -2.5 262,888 + +0.4 262,889 - -2.7 262,909 + +1.8 262,909 + +1.6 262,909 + +0.7 262,910 - -1.2 262,923 + -0.2 262,923 + +0.6 262,924 - -2.0 263,065 + PS417_01195 0.16 -1.4 263,066 - -0.2 263,257 + PS417_01195 0.63 -0.9 263,257 + PS417_01195 0.63 +1.0 263,539 + PS417_01200 0.12 +2.5 263,561 + PS417_01200 0.14 +2.3 263,561 + PS417_01200 0.14 +0.4 263,562 - PS417_01200 0.14 +3.4 263,562 - PS417_01200 0.14 +0.8 263,609 + PS417_01200 0.20 +1.6 263,609 + PS417_01200 0.20 +1.6 263,609 + PS417_01200 0.20 +3.1 263,859 + PS417_01200 0.52 +1.7 263,877 + PS417_01200 0.54 +3.7 263,878 - PS417_01200 0.54 +0.4 263,937 + PS417_01200 0.61 +2.5 263,944 + PS417_01200 0.62 +2.8 263,945 - PS417_01200 0.62 +2.5 264,058 + PS417_01200 0.76 -0.3 264,184 + +4.1 264,184 + +2.8 264,246 + +1.9 264,247 - +3.4 264,316 + +1.9 264,316 + +3.0
Or see this region's nucleotide sequence