Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10340 and PS417_10345 overlap by 20 nucleotides PS417_10345 and PS417_10350 are separated by 173 nucleotides
PS417_10340: PS417_10340 - alcohol dehydrogenase, at 2,209,898 to 2,210,869
_10340
PS417_10345: PS417_10345 - MFS transporter, at 2,210,850 to 2,212,076
_10345
PS417_10350: PS417_10350 - multidrug MFS transporter, at 2,212,250 to 2,213,542
_10350
Position (kb)
2210
2211
2212
2213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2210.159 kb on + strand, within PS417_10340 at 2210.160 kb on - strand, within PS417_10340 at 2210.434 kb on - strand, within PS417_10340 at 2210.454 kb on - strand, within PS417_10340 at 2210.480 kb on - strand, within PS417_10340 at 2210.531 kb on + strand, within PS417_10340 at 2210.583 kb on - strand, within PS417_10340 at 2210.639 kb on - strand, within PS417_10340 at 2211.035 kb on + strand, within PS417_10345 at 2211.094 kb on + strand, within PS417_10345 at 2211.246 kb on + strand, within PS417_10345 at 2211.246 kb on + strand, within PS417_10345 at 2211.355 kb on + strand, within PS417_10345 at 2211.647 kb on + strand, within PS417_10345 at 2211.682 kb on - strand, within PS417_10345 at 2211.682 kb on - strand, within PS417_10345 at 2211.716 kb on + strand, within PS417_10345 at 2211.716 kb on + strand, within PS417_10345 at 2212.009 kb on - strand at 2212.142 kb on - strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.164 kb on - strand at 2212.183 kb on - strand at 2212.370 kb on - strand at 2212.850 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.860 kb on - strand, within PS417_10350 at 2212.860 kb on - strand, within PS417_10350 at 2213.040 kb on - strand, within PS417_10350
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 2,210,159 + PS417_10340 0.27 -0.3 2,210,160 - PS417_10340 0.27 -2.0 2,210,434 - PS417_10340 0.55 +0.2 2,210,454 - PS417_10340 0.57 -1.7 2,210,480 - PS417_10340 0.60 +2.1 2,210,531 + PS417_10340 0.65 -0.5 2,210,583 - PS417_10340 0.70 -1.6 2,210,639 - PS417_10340 0.76 +1.1 2,211,035 + PS417_10345 0.15 -3.5 2,211,094 + PS417_10345 0.20 +0.6 2,211,246 + PS417_10345 0.32 +1.5 2,211,246 + PS417_10345 0.32 +0.0 2,211,355 + PS417_10345 0.41 +1.3 2,211,647 + PS417_10345 0.65 -0.6 2,211,682 - PS417_10345 0.68 -3.1 2,211,682 - PS417_10345 0.68 -0.8 2,211,716 + PS417_10345 0.71 +0.0 2,211,716 + PS417_10345 0.71 -0.8 2,212,009 - -1.5 2,212,142 - +2.0 2,212,163 + -0.2 2,212,163 + +1.4 2,212,163 + -0.1 2,212,163 + +0.3 2,212,164 - +0.7 2,212,183 - -1.4 2,212,370 - +0.7 2,212,850 + PS417_10350 0.46 -1.5 2,212,859 + PS417_10350 0.47 -0.5 2,212,859 + PS417_10350 0.47 -0.6 2,212,859 + PS417_10350 0.47 +0.8 2,212,859 + PS417_10350 0.47 -0.3 2,212,860 - PS417_10350 0.47 -0.5 2,212,860 - PS417_10350 0.47 +0.2 2,213,040 - PS417_10350 0.61 -2.9
Or see this region's nucleotide sequence