Strain Fitness in Pseudomonas simiae WCS417 around PS417_09810

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
2,127,218	+		PS417_09805	0.26	+0.8
2,127,219	-		PS417_09805	0.26	+0.1
2,127,358	+		PS417_09805	0.38	-3.3
2,127,666	-		PS417_09805	0.63	-4.0
2,127,848	+		PS417_09805	0.78	-1.0
2,127,849	-		PS417_09805	0.78	+0.9
2,127,849	-		PS417_09805	0.78	-0.1
2,127,849	-		PS417_09805	0.78	-1.7
2,128,011	-				-1.5
2,128,011	-				+0.1
2,128,087	+				-1.3
2,128,088	-				+0.5
2,128,088	-				+1.1
2,128,165	+				-0.2
2,128,166	-				+1.0
2,128,244	-		PS417_09810	0.11	-2.1
2,128,318	+				-1.5
2,128,319	-		PS417_09810	0.17	+0.8
2,128,399	+		PS417_09810	0.23	-0.6
2,128,399	+		PS417_09810	0.23	+0.2
2,128,399	+		PS417_09810	0.23	-1.4
2,128,400	-		PS417_09810	0.23	-0.3
2,128,400	-		PS417_09810	0.23	-2.4
2,128,400	-		PS417_09810	0.23	+1.1
2,128,505	-		PS417_09810	0.31	+1.4
2,128,505	-		PS417_09810	0.31	-2.8
2,128,532	+		PS417_09810	0.33	-2.7
2,128,532	+		PS417_09810	0.33	-1.3
2,128,533	-		PS417_09810	0.34	-1.1
2,128,894	+		PS417_09810	0.62	-0.5
2,128,928	-		PS417_09810	0.65	-2.7
2,128,928	-		PS417_09810	0.65	+0.5
2,128,974	+		PS417_09810	0.68	+1.4
2,128,975	-		PS417_09810	0.68	+0.4
2,129,000	-		PS417_09810	0.70	+0.2
2,129,042	-		PS417_09810	0.74	-2.3
2,129,152	+		PS417_09810	0.82	-1.4
2,129,152	+		PS417_09810	0.82	-0.2
2,129,170	+		PS417_09810	0.84	-1.9
2,129,171	-		PS417_09810	0.84	-1.2
2,129,171	-		PS417_09810	0.84	+2.6
2,129,171	-		PS417_09810	0.84	+0.4
2,129,300	+				-0.2
2,129,408	-				-2.7
2,129,408	-				-1.3
2,129,477	-				-1.4
2,129,477	-				+1.3
2,129,477	-				-2.4
2,129,480	+				-0.7
2,129,481	-				+0.5
2,129,557	-				+0.2
2,129,557	-				-0.6
2,129,726	+		PS417_09815	0.25	+0.1
2,129,745	+		PS417_09815	0.29	-1.8
2,129,745	+		PS417_09815	0.29	-0.9
2,129,746	-		PS417_09815	0.29	-0.9
2,129,753	-		PS417_09815	0.30	+2.3
2,129,754	+		PS417_09815	0.30	+1.8
2,129,754	+		PS417_09815	0.30	-3.2
2,129,754	+		PS417_09815	0.30	+0.6
2,129,754	+		PS417_09815	0.30	-1.9
2,129,754	+		PS417_09815	0.30	+0.6
2,129,755	-		PS417_09815	0.30	+1.5
2,129,755	-		PS417_09815	0.30	+0.6
2,129,778	+		PS417_09815	0.34	-0.6
2,129,808	+		PS417_09815	0.39	-0.2
2,129,808	+		PS417_09815	0.39	-0.8
2,129,808	+				+2.0
2,129,809	-		PS417_09815	0.39	+0.1
2,129,809	-		PS417_09815	0.39	+1.3
2,129,811	-				-0.2
2,129,864	-		PS417_09815	0.48	+0.2
2,130,196	-				-0.4
2,130,219	+				-3.4
2,130,219	+				-0.2
2,130,220	-				-1.1
2,130,315	+				-2.0
2,130,315	+				+0.3
2,130,315	+				-2.0
2,130,315	+				-0.1
2,130,315	+				+0.3
2,130,315	+				-0.8
2,130,315	+				-1.4
2,130,315	+				-0.8
2,130,316	-				-1.6