Strain Fitness in Pseudomonas simiae WCS417 around PS417_00885

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00880 and PS417_00885 are separated by 255 nucleotidesPS417_00885 and PS417_00890 are separated by 167 nucleotidesPS417_00890 and PS417_00895 are separated by 371 nucleotides PS417_00880: PS417_00880 - hypothetical protein, at 196,831 to 197,124 _00880 PS417_00885: PS417_00885 - integrase, at 197,380 to 198,615 _00885 PS417_00890: PS417_00890 - tRNA-Arg, at 198,783 to 198,859 _00890 PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673 _00895 Position (kb) 197 198 199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 196.396 kb on + strandat 196.397 kb on - strandat 196.397 kb on - strandat 196.397 kb on - strandat 196.533 kb on + strandat 196.632 kb on + strandat 196.677 kb on + strandat 196.678 kb on - strandat 196.678 kb on - strandat 196.680 kb on + strandat 196.681 kb on - strandat 196.726 kb on + strandat 196.726 kb on + strandat 196.726 kb on + strandat 196.726 kb on + strandat 196.727 kb on - strandat 196.727 kb on - strandat 196.731 kb on - strandat 196.782 kb on - strandat 196.789 kb on + strandat 196.796 kb on + strandat 196.797 kb on - strandat 196.797 kb on - strandat 196.816 kb on - strandat 196.883 kb on + strand, within PS417_00880at 196.883 kb on + strand, within PS417_00880at 196.935 kb on - strand, within PS417_00880at 196.975 kb on + strand, within PS417_00880at 197.056 kb on + strand, within PS417_00880at 197.057 kb on - strand, within PS417_00880at 197.057 kb on - strand, within PS417_00880at 197.057 kb on - strand, within PS417_00880at 197.057 kb on - strand, within PS417_00880at 197.058 kb on + strand, within PS417_00880at 197.059 kb on - strand, within PS417_00880at 197.116 kb on - strandat 197.344 kb on + strandat 197.412 kb on + strandat 197.425 kb on + strandat 197.425 kb on + strandat 197.447 kb on + strandat 197.481 kb on - strandat 197.493 kb on + strandat 197.494 kb on - strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.572 kb on + strand, within PS417_00885at 197.696 kb on - strand, within PS417_00885at 197.716 kb on - strand, within PS417_00885at 197.725 kb on + strand, within PS417_00885at 197.725 kb on + strand, within PS417_00885at 197.726 kb on - strand, within PS417_00885at 197.813 kb on - strand, within PS417_00885at 197.875 kb on + strand, within PS417_00885at 197.876 kb on - strand, within PS417_00885at 197.876 kb on - strand, within PS417_00885at 197.876 kb on - strand, within PS417_00885at 197.876 kb on - strand, within PS417_00885at 197.878 kb on + strand, within PS417_00885at 197.878 kb on + strand, within PS417_00885at 197.878 kb on + strand, within PS417_00885at 197.879 kb on - strand, within PS417_00885at 197.924 kb on + strand, within PS417_00885at 197.925 kb on - strand, within PS417_00885at 197.991 kb on + strand, within PS417_00885at 197.992 kb on - strand, within PS417_00885at 198.065 kb on + strand, within PS417_00885at 198.065 kb on + strand, within PS417_00885at 198.066 kb on - strand, within PS417_00885at 198.066 kb on - strand, within PS417_00885at 198.133 kb on + strand, within PS417_00885at 198.160 kb on + strand, within PS417_00885at 198.220 kb on + strand, within PS417_00885at 198.234 kb on + strand, within PS417_00885at 198.234 kb on + strand, within PS417_00885at 198.234 kb on + strand, within PS417_00885at 198.495 kb on + strandat 198.513 kb on - strandat 198.539 kb on + strandat 198.543 kb on + strandat 198.543 kb on + strandat 198.543 kb on + strandat 198.544 kb on - strandat 198.544 kb on - strandat 198.544 kb on - strandat 198.622 kb on + strandat 198.622 kb on + strandat 198.623 kb on - strandat 198.636 kb on + strandat 198.637 kb on - strandat 198.637 kb on - strandat 198.637 kb on - strandat 198.652 kb on + strandat 198.653 kb on - strandat 198.653 kb on - strandat 198.653 kb on - strandat 198.653 kb on - strandat 198.751 kb on + strandat 198.752 kb on - strandat 198.779 kb on + strandat 198.779 kb on + strandat 198.779 kb on + strandat 198.779 kb on + strandat 198.779 kb on + strandat 198.780 kb on - strandat 198.780 kb on - strandat 198.780 kb on - strandat 198.780 kb on - strandat 198.781 kb on + strandat 198.781 kb on + strandat 198.781 kb on + strandat 198.781 kb on + strandat 198.781 kb on + strandat 198.781 kb on + strandat 198.782 kb on - strandat 199.007 kb on - strandat 199.015 kb on + strandat 199.051 kb on + strandat 199.052 kb on - strandat 199.062 kb on - strandat 199.076 kb on + strandat 199.188 kb on + strandat 199.188 kb on + strandat 199.189 kb on - strandat 199.189 kb on - strandat 199.217 kb on + strandat 199.218 kb on - strandat 199.239 kb on + strandat 199.350 kb on + strandat 199.610 kb on - strand, within PS417_00895at 199.610 kb on - strand, within PS417_00895

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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196,396 + +1.7
196,397 - -4.0
196,397 - -0.5
196,397 - +0.7
196,533 + -0.9
196,632 + +2.4
196,677 + -3.4
196,678 - -1.3
196,678 - -1.0
196,680 + -2.0
196,681 - +0.6
196,726 + -2.0
196,726 + +0.4
196,726 + +1.8
196,726 + +0.4
196,727 - +0.6
196,727 - -2.4
196,731 - -1.9
196,782 - +0.2
196,789 + +2.4
196,796 + -1.9
196,797 - -0.0
196,797 - -0.8
196,816 - +1.2
196,883 + PS417_00880 0.18 +1.3
196,883 + PS417_00880 0.18 -1.4
196,935 - PS417_00880 0.35 +0.7
196,975 + PS417_00880 0.49 -0.2
197,056 + PS417_00880 0.77 +0.2
197,057 - PS417_00880 0.77 -2.1
197,057 - PS417_00880 0.77 +0.6
197,057 - PS417_00880 0.77 -0.6
197,057 - PS417_00880 0.77 +1.6
197,058 + PS417_00880 0.77 +1.5
197,059 - PS417_00880 0.78 +0.9
197,116 - -0.4
197,344 + +0.5
197,412 + -0.9
197,425 + +1.8
197,425 + -0.4
197,447 + +0.0
197,481 - -0.8
197,493 + +0.6
197,494 - -2.8
197,495 + +0.6
197,495 + -1.0
197,496 - +0.6
197,496 - -1.2
197,496 - -2.1
197,572 + PS417_00885 0.16 -1.0
197,696 - PS417_00885 0.26 -3.9
197,716 - PS417_00885 0.27 +1.1
197,725 + PS417_00885 0.28 -0.6
197,725 + PS417_00885 0.28 -0.2
197,726 - PS417_00885 0.28 +0.2
197,813 - PS417_00885 0.35 +0.7
197,875 + PS417_00885 0.40 +0.9
197,876 - PS417_00885 0.40 -2.1
197,876 - PS417_00885 0.40 -1.8
197,876 - PS417_00885 0.40 -0.5
197,876 - PS417_00885 0.40 -0.5
197,878 + PS417_00885 0.40 +3.4
197,878 + PS417_00885 0.40 +1.5
197,878 + PS417_00885 0.40 -1.9
197,879 - PS417_00885 0.40 +1.3
197,924 + PS417_00885 0.44 +1.5
197,925 - PS417_00885 0.44 +2.4
197,991 + PS417_00885 0.49 -0.6
197,992 - PS417_00885 0.50 -0.6
198,065 + PS417_00885 0.55 -0.2
198,065 + PS417_00885 0.55 +4.2
198,066 - PS417_00885 0.56 +0.1
198,066 - PS417_00885 0.56 +0.2
198,133 + PS417_00885 0.61 -0.6
198,160 + PS417_00885 0.63 +0.2
198,220 + PS417_00885 0.68 +0.4
198,234 + PS417_00885 0.69 +1.5
198,234 + PS417_00885 0.69 +0.3
198,234 + PS417_00885 0.69 -2.0
198,495 + +0.5
198,513 - -1.7
198,539 + +0.5
198,543 + -0.2
198,543 + -2.0
198,543 + -2.2
198,544 - -0.3
198,544 - +1.8
198,544 - -0.9
198,622 + -0.1
198,622 + -1.0
198,623 - +0.1
198,636 + -0.5
198,637 - -2.8
198,637 - +0.5
198,637 - +0.2
198,652 + +0.5
198,653 - +0.5
198,653 - +1.0
198,653 - +0.3
198,653 - -0.2
198,751 + +0.2
198,752 - +0.2
198,779 + -2.4
198,779 + -0.1
198,779 + -3.1
198,779 + -2.7
198,779 + -0.8
198,780 - +0.0
198,780 - -0.5
198,780 - -3.0
198,780 - -0.1
198,781 + -1.2
198,781 + -2.8
198,781 + -2.5
198,781 + -3.3
198,781 + -0.2
198,781 + -3.2
198,782 - -1.3
199,007 - -2.3
199,015 + +1.0
199,051 + -1.3
199,052 - -1.0
199,062 - -1.0
199,076 + -1.9
199,188 + +0.6
199,188 + -1.7
199,189 - -2.5
199,189 - +0.2
199,217 + +0.8
199,218 - -0.9
199,239 + -0.8
199,350 + +0.9
199,610 - PS417_00895 0.26 -0.1
199,610 - PS417_00895 0.26 -0.2

Or see this region's nucleotide sequence