Strain Fitness in Pseudomonas simiae WCS417 around PS417_00860

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00855 and PS417_00860 are separated by 92 nucleotidesPS417_00860 and PS417_00865 overlap by 4 nucleotidesPS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00850: PS417_00850 - hypothetical protein, at 190,575 to 190,763 _00850 PS417_00855: PS417_00855 - chromosome segregation protein SMC, at 190,726 to 191,670 _00855 PS417_00860: PS417_00860 - hypothetical protein, at 191,763 to 194,669 _00860 PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938 _00865 PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219 _00870 Position (kb) 191 192 193 194 195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 190.856 kb on + strand, within PS417_00855at 190.942 kb on + strand, within PS417_00855at 190.990 kb on + strand, within PS417_00855at 191.076 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.106 kb on + strand, within PS417_00855at 191.110 kb on + strand, within PS417_00855at 191.110 kb on + strand, within PS417_00855at 191.163 kb on + strand, within PS417_00855at 191.164 kb on - strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.474 kb on - strand, within PS417_00855at 191.608 kb on + strandat 191.676 kb on + strandat 191.677 kb on - strandat 191.807 kb on + strandat 191.815 kb on + strandat 191.815 kb on + strandat 191.815 kb on + strandat 191.816 kb on - strandat 191.886 kb on + strandat 191.886 kb on + strandat 191.886 kb on + strandat 191.971 kb on + strandat 191.971 kb on + strandat 191.974 kb on + strandat 191.975 kb on - strandat 191.975 kb on - strandat 192.449 kb on - strand, within PS417_00860at 192.564 kb on + strand, within PS417_00860at 192.724 kb on + strand, within PS417_00860at 192.724 kb on + strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.862 kb on + strand, within PS417_00860at 192.917 kb on - strand, within PS417_00860at 193.090 kb on + strand, within PS417_00860at 193.091 kb on - strand, within PS417_00860at 193.091 kb on - strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.211 kb on - strand, within PS417_00860at 193.218 kb on + strand, within PS417_00860at 193.219 kb on - strand, within PS417_00860at 193.219 kb on - strand, within PS417_00860at 193.420 kb on - strand, within PS417_00860at 194.207 kb on - strand, within PS417_00860at 194.536 kb on + strandat 194.536 kb on + strandat 194.537 kb on - strandat 194.537 kb on - strandat 194.739 kb on + strand, within PS417_00865at 194.740 kb on - strand, within PS417_00865at 194.740 kb on - strand, within PS417_00865at 194.741 kb on + strand, within PS417_00865at 194.741 kb on + strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 195.121 kb on + strand, within PS417_00870at 195.121 kb on + strand, within PS417_00870at 195.122 kb on - strand, within PS417_00870at 195.172 kb on - strand, within PS417_00870at 195.272 kb on - strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.375 kb on - strandat 195.375 kb on - strandat 195.375 kb on - strandat 195.429 kb on + strandat 195.430 kb on - strandat 195.430 kb on - strandat 195.572 kb on + strandat 195.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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190,856 + PS417_00855 0.14 +2.6
190,942 + PS417_00855 0.23 -1.0
190,990 + PS417_00855 0.28 -1.2
191,076 + PS417_00855 0.37 +0.8
191,102 + PS417_00855 0.40 -1.2
191,102 + PS417_00855 0.40 +0.7
191,102 + PS417_00855 0.40 -0.8
191,102 + PS417_00855 0.40 -0.1
191,106 + PS417_00855 0.40 +1.4
191,110 + PS417_00855 0.41 +0.4
191,110 + PS417_00855 0.41 -1.4
191,163 + PS417_00855 0.46 +0.6
191,164 - PS417_00855 0.46 -3.4
191,470 + PS417_00855 0.79 -1.1
191,470 + PS417_00855 0.79 +0.4
191,470 + PS417_00855 0.79 +2.0
191,470 + PS417_00855 0.79 -0.6
191,474 - PS417_00855 0.79 +3.4
191,608 + -3.7
191,676 + -0.3
191,677 - -3.4
191,807 + +0.3
191,815 + -0.4
191,815 + -1.4
191,815 + +1.4
191,816 - -2.1
191,886 + +2.3
191,886 + -0.5
191,886 + +0.9
191,971 + -1.1
191,971 + -2.5
191,974 + +0.4
191,975 - -4.0
191,975 - -1.0
192,449 - PS417_00860 0.24 -1.1
192,564 + PS417_00860 0.28 +2.0
192,724 + PS417_00860 0.33 -0.4
192,724 + PS417_00860 0.33 -2.6
192,725 - PS417_00860 0.33 -0.2
192,725 - PS417_00860 0.33 -0.6
192,725 - PS417_00860 0.33 +0.2
192,862 + PS417_00860 0.38 -1.7
192,917 - PS417_00860 0.40 -0.3
193,090 + PS417_00860 0.46 -0.3
193,091 - PS417_00860 0.46 +0.0
193,091 - PS417_00860 0.46 -2.1
193,210 + PS417_00860 0.50 -1.0
193,210 + PS417_00860 0.50 -0.8
193,210 + PS417_00860 0.50 -1.3
193,211 - PS417_00860 0.50 -1.2
193,218 + PS417_00860 0.50 -0.1
193,219 - PS417_00860 0.50 -0.1
193,219 - PS417_00860 0.50 -1.2
193,420 - PS417_00860 0.57 -1.2
194,207 - PS417_00860 0.84 -0.2
194,536 + +1.7
194,536 + +1.1
194,537 - +0.1
194,537 - +0.1
194,739 + PS417_00865 0.27 +1.0
194,740 - PS417_00865 0.27 -2.5
194,740 - PS417_00865 0.27 +0.8
194,741 + PS417_00865 0.27 -0.3
194,741 + PS417_00865 0.27 +0.1
194,742 - PS417_00865 0.28 +0.4
194,742 - PS417_00865 0.28 -0.9
194,742 - PS417_00865 0.28 -2.9
195,121 + PS417_00870 0.65 +0.4
195,121 + PS417_00870 0.65 +0.3
195,122 - PS417_00870 0.66 +0.2
195,172 - PS417_00870 0.83 -2.2
195,272 - -1.3
195,309 + -0.1
195,309 + -0.7
195,309 + +0.0
195,309 + -2.6
195,310 - +0.5
195,310 - +0.0
195,374 + -3.2
195,374 + -3.4
195,374 + -1.2
195,374 + +2.4
195,374 + -1.9
195,374 + +0.8
195,374 + +0.4
195,374 + +4.6
195,374 + +1.3
195,375 - -0.4
195,375 - -0.8
195,375 - -0.0
195,429 + -2.8
195,430 - +0.3
195,430 - -1.2
195,572 + +1.9
195,573 - -0.5

Or see this region's nucleotide sequence