Strain Fitness in Pseudomonas simiae WCS417 around PS417_07995

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,747,509	-				-2.9
1,747,636	+		PS417_07985	0.45	+0.6
1,747,834	+				+0.5
1,747,855	+				+1.7
1,747,856	-				-3.2
1,747,869	+				+0.8
1,747,869	+				-2.4
1,747,869	+				+1.2
1,747,924	+				+0.5
1,747,924	+				-2.0
1,747,924	+				+2.3
1,747,925	-				-2.9
1,747,931	+				-2.4
1,747,932	-				+0.1
1,747,932	-				-1.1
1,747,932	-				-1.4
1,747,932	-				+2.2
1,748,026	-		PS417_07990	0.24	-0.0
1,748,119	+		PS417_07990	0.48	+0.3
1,748,120	-		PS417_07990	0.48	+0.3
1,748,169	+		PS417_07990	0.60	+0.3
1,748,169	+		PS417_07990	0.60	-3.2
1,748,169	+		PS417_07990	0.60	-0.1
1,748,169	+		PS417_07990	0.60	+0.1
1,748,169	+		PS417_07990	0.60	-0.7
1,748,170	-		PS417_07990	0.61	-1.3
1,748,354	+				-0.1
1,748,354	+				-1.3
1,748,354	+				+2.7
1,748,355	-				-1.3
1,748,404	+				-2.5
1,748,405	-				-3.0
1,748,494	+		PS417_07995	0.12	-2.4
1,748,494	+		PS417_07995	0.12	-1.0
1,748,495	-		PS417_07995	0.12	-0.3
1,749,197	+		PS417_07995	0.63	+2.4
1,749,197	+		PS417_07995	0.63	-3.2
1,749,197	+		PS417_07995	0.63	+5.7
1,749,198	-		PS417_07995	0.63	-0.5
1,749,198	-		PS417_07995	0.63	+1.4
1,749,198	-		PS417_07995	0.63	-0.9
1,749,203	+		PS417_07995	0.64	+1.2
1,749,204	-		PS417_07995	0.64	+1.7
1,749,269	-		PS417_07995	0.69	+0.4
1,749,302	+		PS417_07995	0.71	-2.0
1,749,302	+		PS417_07995	0.71	+1.2
1,749,303	-		PS417_07995	0.71	-2.3
1,749,303	-		PS417_07995	0.71	-0.1
1,749,303	-		PS417_07995	0.71	+1.4
1,749,303	-		PS417_07995	0.71	+0.1
1,749,303	-		PS417_07995	0.71	-0.1
1,749,510	-		PS417_07995	0.86	-2.1
1,749,583	+				-0.1
1,749,590	+				+1.2
1,749,591	-				-0.4
1,749,591	-				+0.9
1,749,591	-				-2.6
1,749,591	-				+0.9
1,749,791	-				+0.7
1,749,795	-				-1.6
1,749,851	+				-0.9
1,750,036	-		PS417_08000	0.23	-3.2
1,750,059	-		PS417_08000	0.25	-2.0
1,750,086	-		PS417_08000	0.29	+0.0
1,750,086	-		PS417_08000	0.29	+1.2
1,750,086	-		PS417_08000	0.29	+0.0
1,750,121	+		PS417_08000	0.33	-2.8
1,750,122	-		PS417_08000	0.33	-1.9
1,750,268	+		PS417_08000	0.51	-1.5
1,750,412	+		PS417_08000	0.68	-2.2
1,750,412	+		PS417_08000	0.68	-2.9
1,750,412	+		PS417_08000	0.68	-2.0
1,750,413	-		PS417_08000	0.68	-2.1
1,750,413	-		PS417_08000	0.68	-1.7
1,750,413	-		PS417_08000	0.68	+0.8
1,750,523	+		PS417_08000	0.82	-3.7
1,750,524	-		PS417_08000	0.82	+0.5
1,750,551	+		PS417_08000	0.85	-1.5
1,750,552	-		PS417_08000	0.85	-4.3
1,750,579	+		PS417_08000	0.88	-0.0
1,750,579	+		PS417_08000	0.88	-3.3
1,750,579	+		PS417_08000	0.88	-2.0
1,750,580	-		PS417_08000	0.88	-1.3
1,750,602	+				-0.9
1,750,602	+				-1.9
1,750,602	+				-2.2
1,750,602	+				-3.4
1,750,603	-				-2.7
1,750,603	-				-2.6
1,750,603	-				-1.5
1,750,654	-				+0.3