Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07625 and PS417_07630 are separated by 9 nucleotides PS417_07630 and PS417_07635 are separated by 11 nucleotides
PS417_07625: PS417_07625 - helicase, at 1,677,353 to 1,680,046
_07625
PS417_07630: PS417_07630 - hypothetical protein, at 1,680,056 to 1,680,622
_07630
PS417_07635: PS417_07635 - transcription-repair coupling factor, at 1,680,634 to 1,684,083
_07635
Position (kb) 1680
1681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1679.168 kb on - strand, within PS417_07625 at 1679.168 kb on - strand, within PS417_07625 at 1679.523 kb on + strand, within PS417_07625 at 1679.523 kb on + strand, within PS417_07625 at 1679.523 kb on + strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.524 kb on - strand, within PS417_07625 at 1679.535 kb on + strand, within PS417_07625 at 1679.535 kb on + strand, within PS417_07625 at 1679.569 kb on - strand, within PS417_07625 at 1679.990 kb on - strand at 1680.147 kb on + strand, within PS417_07630 at 1680.393 kb on + strand, within PS417_07630 at 1680.393 kb on + strand, within PS417_07630 at 1680.393 kb on + strand, within PS417_07630 at 1680.394 kb on - strand, within PS417_07630 at 1680.394 kb on - strand, within PS417_07630 at 1680.394 kb on - strand, within PS417_07630 at 1680.424 kb on + strand, within PS417_07630 at 1680.427 kb on + strand, within PS417_07630 at 1680.428 kb on - strand, within PS417_07630 at 1680.452 kb on - strand, within PS417_07630 at 1680.452 kb on - strand, within PS417_07630 at 1680.452 kb on - strand, within PS417_07630 at 1680.678 kb on + strand at 1680.678 kb on + strand at 1680.678 kb on + strand at 1680.678 kb on + strand at 1680.678 kb on + strand at 1680.679 kb on - strand at 1680.682 kb on - strand at 1680.682 kb on - strand at 1680.682 kb on - strand at 1680.729 kb on + strand at 1681.152 kb on + strand, within PS417_07635 at 1681.154 kb on + strand, within PS417_07635 at 1681.155 kb on - strand, within PS417_07635 at 1681.155 kb on - strand, within PS417_07635 at 1681.247 kb on - strand, within PS417_07635 at 1681.340 kb on + strand, within PS417_07635 at 1681.340 kb on + strand, within PS417_07635 at 1681.346 kb on + strand, within PS417_07635 at 1681.347 kb on - strand, within PS417_07635 at 1681.362 kb on + strand, within PS417_07635 at 1681.362 kb on + strand, within PS417_07635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 1,679,168 - PS417_07625 0.67 -1.0 1,679,168 - PS417_07625 0.67 +0.1 1,679,523 + PS417_07625 0.81 +3.0 1,679,523 + PS417_07625 0.81 -4.4 1,679,523 + PS417_07625 0.81 +1.6 1,679,524 - PS417_07625 0.81 -3.5 1,679,524 - PS417_07625 0.81 +0.6 1,679,524 - PS417_07625 0.81 -0.3 1,679,524 - PS417_07625 0.81 +0.2 1,679,524 - PS417_07625 0.81 +1.8 1,679,524 - PS417_07625 0.81 +0.0 1,679,524 - PS417_07625 0.81 +0.2 1,679,535 + PS417_07625 0.81 -1.3 1,679,535 + PS417_07625 0.81 +3.3 1,679,569 - PS417_07625 0.82 +0.8 1,679,990 - -1.0 1,680,147 + PS417_07630 0.16 +0.4 1,680,393 + PS417_07630 0.59 +0.1 1,680,393 + PS417_07630 0.59 -0.5 1,680,393 + PS417_07630 0.59 +0.3 1,680,394 - PS417_07630 0.60 +1.6 1,680,394 - PS417_07630 0.60 -1.0 1,680,394 - PS417_07630 0.60 +0.9 1,680,424 + PS417_07630 0.65 -2.0 1,680,427 + PS417_07630 0.65 +0.3 1,680,428 - PS417_07630 0.66 +0.5 1,680,452 - PS417_07630 0.70 -0.1 1,680,452 - PS417_07630 0.70 -0.2 1,680,452 - PS417_07630 0.70 +0.6 1,680,678 + -0.2 1,680,678 + -2.0 1,680,678 + +1.4 1,680,678 + -1.1 1,680,678 + +0.4 1,680,679 - -1.0 1,680,682 - -0.5 1,680,682 - +0.1 1,680,682 - -1.1 1,680,729 + -0.1 1,681,152 + PS417_07635 0.15 +0.6 1,681,154 + PS417_07635 0.15 +3.1 1,681,155 - PS417_07635 0.15 +0.3 1,681,155 - PS417_07635 0.15 -1.7 1,681,247 - PS417_07635 0.18 -0.6 1,681,340 + PS417_07635 0.20 +0.1 1,681,340 + PS417_07635 0.20 -0.8 1,681,346 + PS417_07635 0.21 -2.1 1,681,347 - PS417_07635 0.21 +0.4 1,681,362 + PS417_07635 0.21 -0.8 1,681,362 + PS417_07635 0.21 +0.7
Or see this region's nucleotide sequence