Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00650 and PS417_00655 are separated by 102 nucleotides PS417_00655 and PS417_00660 are separated by 15 nucleotides
PS417_00650: PS417_00650 - LysR family transcriptional regulator, at 132,672 to 133,592
_00650
PS417_00655: PS417_00655 - DSBA oxidoreductase, at 133,695 to 135,230
_00655
PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304
_00660
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 133.242 kb on + strand, within PS417_00650 at 133.612 kb on + strand at 133.613 kb on - strand at 133.669 kb on + strand at 133.760 kb on - strand at 133.760 kb on - strand at 133.872 kb on + strand, within PS417_00655 at 133.872 kb on + strand, within PS417_00655 at 133.873 kb on - strand, within PS417_00655 at 133.876 kb on + strand, within PS417_00655 at 133.877 kb on - strand, within PS417_00655 at 133.877 kb on - strand, within PS417_00655 at 133.877 kb on - strand, within PS417_00655 at 133.877 kb on - strand, within PS417_00655 at 134.044 kb on - strand, within PS417_00655 at 134.044 kb on - strand, within PS417_00655 at 134.152 kb on - strand, within PS417_00655 at 134.218 kb on + strand, within PS417_00655 at 134.229 kb on + strand, within PS417_00655 at 134.230 kb on - strand, within PS417_00655 at 134.847 kb on + strand, within PS417_00655 at 134.847 kb on + strand, within PS417_00655 at 134.999 kb on + strand, within PS417_00655 at 135.141 kb on + strand at 135.142 kb on - strand at 135.144 kb on + strand at 135.144 kb on + strand at 135.145 kb on - strand at 135.309 kb on + strand at 135.310 kb on - strand at 135.310 kb on - strand at 135.518 kb on + strand, within PS417_00660 at 135.870 kb on + strand, within PS417_00660 at 135.871 kb on - strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.984 kb on + strand, within PS417_00660 at 135.985 kb on - strand, within PS417_00660 at 136.023 kb on - strand, within PS417_00660
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 133,242 + PS417_00650 0.62 -3.4 133,612 + +2.5 133,613 - -1.9 133,669 + -0.3 133,760 - -0.3 133,760 - +0.0 133,872 + PS417_00655 0.12 -0.8 133,872 + PS417_00655 0.12 +0.8 133,873 - PS417_00655 0.12 +0.5 133,876 + PS417_00655 0.12 -2.8 133,877 - PS417_00655 0.12 +0.2 133,877 - PS417_00655 0.12 +0.9 133,877 - PS417_00655 0.12 +1.3 133,877 - PS417_00655 0.12 -0.5 134,044 - PS417_00655 0.23 -1.4 134,044 - PS417_00655 0.23 +0.0 134,152 - PS417_00655 0.30 +0.5 134,218 + PS417_00655 0.34 -2.2 134,229 + PS417_00655 0.35 -1.2 134,230 - PS417_00655 0.35 -2.0 134,847 + PS417_00655 0.75 -0.5 134,847 + PS417_00655 0.75 +0.6 134,999 + PS417_00655 0.85 +0.6 135,141 + +2.5 135,142 - -1.5 135,144 + -0.5 135,144 + -0.5 135,145 - -3.1 135,309 + +0.3 135,310 - -1.0 135,310 - +0.2 135,518 + PS417_00660 0.26 +0.2 135,870 + PS417_00660 0.59 +2.3 135,871 - PS417_00660 0.59 -0.5 135,933 + PS417_00660 0.65 -0.8 135,933 + PS417_00660 0.65 +4.0 135,984 + PS417_00660 0.70 -1.4 135,985 - PS417_00660 0.70 -2.0 136,023 - PS417_00660 0.73 -0.2
Or see this region's nucleotide sequence