Strain Fitness in Pseudomonas simiae WCS417 around PS417_06560

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,453,806	+		PS417_06555	0.48	+1.0
1,453,806	+		PS417_06555	0.48	+0.2
1,453,806	+		PS417_06555	0.48	+3.2
1,453,806	+		PS417_06555	0.48	+0.4
1,453,806	+		PS417_06555	0.48	-0.8
1,453,807	-		PS417_06555	0.48	+0.8
1,454,007	-		PS417_06555	0.60	+0.3
1,454,007	-		PS417_06555	0.60	+0.6
1,454,030	-		PS417_06555	0.62	+0.7
1,454,030	-		PS417_06555	0.62	+1.0
1,454,030	-		PS417_06555	0.62	-2.5
1,454,052	+		PS417_06555	0.63	-3.3
1,454,249	+		PS417_06555	0.75	-0.8
1,454,250	-		PS417_06555	0.76	-0.4
1,454,388	+		PS417_06555	0.84	+0.3
1,454,389	-		PS417_06555	0.84	+0.2
1,454,389	-		PS417_06555	0.84	-0.4
1,454,458	+		PS417_06555	0.88	-0.8
1,454,479	-		PS417_06555	0.90	-0.6
1,454,518	-				+0.1
1,454,521	+				+0.8
1,454,521	+				-0.3
1,454,522	-				-2.5
1,454,522	-				+0.2
1,454,639	+				-0.3
1,454,700	+				-0.2
1,454,700	+				+1.6
1,454,700	+				-0.9
1,454,701	-				+1.1
1,454,702	+				-0.2
1,454,703	-				-1.4
1,454,703	-				+1.0
1,454,732	-				-0.2
1,454,947	+		PS417_06560	0.29	-0.9
1,454,948	-		PS417_06560	0.29	+0.4
1,455,101	-		PS417_06560	0.52	-0.6
1,455,247	+		PS417_06560	0.74	+0.2
1,455,247	+		PS417_06560	0.74	-1.2
1,455,247	+		PS417_06560	0.74	+0.8
1,455,248	-		PS417_06560	0.74	-0.5
1,455,248	-		PS417_06560	0.74	-2.0
1,455,396	+				-2.9
1,455,396	+				-1.2
1,455,530	+				-0.1
1,455,607	+		PS417_06565	0.15	-0.5
1,455,619	+		PS417_06565	0.17	+0.7
1,455,628	+		PS417_06565	0.18	-1.8
1,455,628	+		PS417_06565	0.18	+1.5
1,455,629	-		PS417_06565	0.18	-1.0
1,456,002	-		PS417_06565	0.81	+0.4
1,456,003	+		PS417_06565	0.81	+0.3
1,456,140	+				+1.3
1,456,141	-				+1.0
1,456,157	+				-0.1
1,456,157	+				+0.4
1,456,157	+				-0.5
1,456,178	+				-0.5
1,456,190	+				-1.8
1,456,274	+				-0.6
1,456,280	+				+0.1
1,456,281	-				-2.5
1,456,391	+		PS417_06570	0.18	-1.5
1,456,391	+		PS417_06570	0.18	+0.8