Strain Fitness in Pseudomonas simiae WCS417 around PS417_05435

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,219,503	-				+0.2
1,219,683	-		PS417_05430	0.28	-1.6
1,219,713	+		PS417_05430	0.31	+1.6
1,219,713	+		PS417_05430	0.31	-1.7
1,219,714	-		PS417_05430	0.32	+1.3
1,219,714	-		PS417_05430	0.32	+0.9
1,219,714	-		PS417_05430	0.32	-1.3
1,219,714	-		PS417_05430	0.32	-0.3
1,219,757	+		PS417_05430	0.36	+1.1
1,219,781	+		PS417_05430	0.38	-1.1
1,219,812	+		PS417_05430	0.42	+0.2
1,219,816	+		PS417_05430	0.42	-0.4
1,219,816	+		PS417_05430	0.42	+0.2
1,219,816	+		PS417_05430	0.42	-0.2
1,219,817	-		PS417_05430	0.42	+0.6
1,219,817	-		PS417_05430	0.42	-2.2
1,219,865	+		PS417_05430	0.47	-1.9
1,219,865	+		PS417_05430	0.47	+0.4
1,219,865	+		PS417_05430	0.47	-0.1
1,219,866	-		PS417_05430	0.47	-1.8
1,219,866	-		PS417_05430	0.47	-0.2
1,219,937	+		PS417_05430	0.55	+0.0
1,220,008	+		PS417_05430	0.62	+2.0
1,220,008	+		PS417_05430	0.62	-2.6
1,220,601	-		PS417_05435	0.11	+0.9
1,220,621	-		PS417_05435	0.12	-3.3
1,220,919	+		PS417_05435	0.28	-0.0
1,220,920	-		PS417_05435	0.28	+0.4
1,221,303	+		PS417_05435	0.48	+0.0
1,221,303	+		PS417_05435	0.48	-2.2
1,221,318	+		PS417_05435	0.49	+1.1
1,221,595	+		PS417_05435	0.64	-1.7
1,221,599	+		PS417_05435	0.64	+3.6
1,221,600	-		PS417_05435	0.64	+1.7
1,221,638	+		PS417_05435	0.66	-0.2
1,221,700	-		PS417_05435	0.69	+0.6
1,222,243	+				+2.0
1,222,353	-				+1.0
1,222,526	+				+0.1
1,222,527	-				+0.3
1,222,571	+				+1.1
1,222,595	+				-2.5
1,222,595	+				+0.5
1,222,596	-				-0.8
1,222,674	+		PS417_05440	0.14	-1.2
1,222,675	-		PS417_05440	0.14	+1.4
1,222,724	-		PS417_05440	0.18	-0.1
1,222,810	+		PS417_05440	0.24	-1.9
1,222,811	-		PS417_05440	0.25	+0.6
1,223,020	+		PS417_05440	0.41	-0.2
1,223,021	-		PS417_05440	0.41	-0.3
1,223,021	-		PS417_05440	0.41	+2.2
1,223,021	-		PS417_05440	0.41	-0.4
1,223,021	-		PS417_05440	0.41	-1.4
1,223,021	-		PS417_05440	0.41	-2.1
1,223,116	+		PS417_05440	0.48	-0.4
1,223,117	-				+0.2
1,223,233	-		PS417_05440	0.57	+2.5