Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00505 and PS417_00510 are separated by 57 nucleotides PS417_00510 and PS417_00515 are separated by 211 nucleotides
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505 at 101.398 kb on - strand at 101.398 kb on - strand at 101.451 kb on - strand at 101.476 kb on + strand at 101.477 kb on - strand at 101.507 kb on + strand at 101.508 kb on - strand at 101.560 kb on + strand at 101.563 kb on - strand at 101.604 kb on - strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.608 kb on - strand at 101.608 kb on - strand at 101.608 kb on - strand at 102.348 kb on + strand, within PS417_00510 at 102.614 kb on + strand, within PS417_00510 at 103.150 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 100,561 - PS417_00505 0.34 -2.3 100,561 - PS417_00505 0.34 -1.5 100,612 - PS417_00505 0.37 -1.7 100,629 + PS417_00505 0.39 -0.4 100,629 + PS417_00505 0.39 -0.4 100,630 - PS417_00505 0.39 -1.5 101,398 - -0.5 101,398 - -1.1 101,451 - +1.0 101,476 + +0.6 101,477 - -1.7 101,507 + +0.5 101,508 - -0.1 101,560 + -0.9 101,563 - -1.4 101,604 - -3.1 101,607 + -0.1 101,607 + +0.1 101,607 + -1.4 101,608 - -1.6 101,608 - -2.2 101,608 - -0.8 102,348 + PS417_00510 0.49 -3.1 102,614 + PS417_00510 0.65 -1.8 103,150 + -0.4 103,253 + +0.8 103,253 + +0.0 103,253 + +0.2 103,253 + +0.2 103,253 + +1.3 103,254 - -1.7 103,254 - +0.2 103,254 - +0.5 103,259 + +0.8 103,260 - +1.0 103,266 + -2.5 103,267 - +0.2 103,267 - +0.3 103,273 + -1.0 103,274 - -1.0 103,274 - +1.2 103,274 - -0.0 103,274 - +0.9 103,274 - -1.2 103,307 - +0.7 103,307 - +1.1 103,307 - -0.5 103,310 + +0.6 103,310 + -2.1 103,311 - +0.6 103,311 - +0.1 103,311 - -1.7 103,311 - +0.7 103,311 - +0.5 103,311 - +0.7 103,525 + PS417_00515 0.16 +0.4 103,525 + PS417_00515 0.16 +2.0 103,531 + PS417_00515 0.17 -1.0 103,708 - PS417_00515 0.40 -1.0 103,789 + PS417_00515 0.50 -0.0 103,789 + PS417_00515 0.50 +0.2 103,789 + PS417_00515 0.50 -1.0 103,790 - PS417_00515 0.50 -3.1 103,790 - PS417_00515 0.50 +0.3 103,790 - PS417_00515 0.50 -0.2 103,790 - PS417_00515 0.50 +2.1 103,790 - PS417_00515 0.50 -0.4 103,790 - PS417_00515 0.50 -2.3 103,790 - PS417_00515 0.50 -1.1 103,790 - PS417_00515 0.50 +0.0 103,855 + PS417_00515 0.59 -2.7 103,856 - PS417_00515 0.59 -1.9 103,856 - PS417_00515 0.59 -1.0 103,856 - PS417_00515 0.59 +3.8 104,037 - PS417_00515 0.82 -1.4 104,048 + PS417_00515 0.84 -1.7 104,048 + PS417_00515 0.84 -2.3 104,049 - PS417_00515 0.84 -0.8 104,049 - PS417_00515 0.84 -1.5 104,049 - PS417_00515 0.84 -0.7 104,049 - PS417_00515 0.84 -1.0 104,049 - PS417_00515 0.84 -1.1 104,049 - PS417_00515 0.84 +2.4
Or see this region's nucleotide sequence