Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00495 and PS417_00500 are separated by 54 nucleotides PS417_00500 and PS417_00505 are separated by 72 nucleotides
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
PS417_00500: PS417_00500 - membrane protein, at 98,990 to 100,021
_00500
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
Position (kb) 98
99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.045 kb on + strand, within PS417_00495 at 98.142 kb on - strand, within PS417_00495 at 98.397 kb on - strand, within PS417_00495 at 98.766 kb on - strand, within PS417_00495 at 98.799 kb on + strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.867 kb on - strand at 98.936 kb on - strand at 98.969 kb on + strand at 98.969 kb on + strand at 98.973 kb on + strand at 98.973 kb on + strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.976 kb on + strand at 98.977 kb on - strand at 98.991 kb on + strand at 98.992 kb on - strand at 98.992 kb on - strand at 99.158 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.631 kb on - strand, within PS417_00500 at 99.634 kb on - strand, within PS417_00500 at 100.064 kb on + strand at 100.096 kb on - strand at 100.113 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.185 kb on + strand at 100.185 kb on + strand at 100.336 kb on - strand, within PS417_00505 at 100.463 kb on + strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 98,045 + PS417_00495 0.22 -0.3 98,142 - PS417_00495 0.31 -1.1 98,397 - PS417_00495 0.53 -2.3 98,766 - PS417_00495 0.85 -1.2 98,799 + PS417_00495 0.88 -1.4 98,800 - PS417_00495 0.88 +0.4 98,800 - PS417_00495 0.88 -1.1 98,867 - +0.4 98,936 - -0.1 98,969 + -1.8 98,969 + +0.4 98,973 + -0.7 98,973 + -0.6 98,974 - -0.2 98,974 - +2.6 98,974 - +0.0 98,976 + -1.8 98,977 - +3.3 98,991 + -0.2 98,992 - +0.6 98,992 - -0.3 99,158 - PS417_00500 0.16 -0.0 99,208 - PS417_00500 0.21 -1.3 99,208 - PS417_00500 0.21 +0.1 99,517 - PS417_00500 0.51 +0.6 99,517 - PS417_00500 0.51 +0.1 99,517 - PS417_00500 0.51 +0.3 99,631 - PS417_00500 0.62 +2.0 99,634 - PS417_00500 0.62 +0.9 100,064 + +0.2 100,096 - -1.7 100,113 + +1.0 100,133 + +0.3 100,133 + -1.6 100,133 + -0.9 100,185 + +2.2 100,185 + -0.1 100,336 - PS417_00505 0.17 -0.4 100,463 + PS417_00505 0.27 -0.1 100,561 - PS417_00505 0.34 +0.0 100,561 - PS417_00505 0.34 -0.8 100,612 - PS417_00505 0.37 +0.2 100,629 + PS417_00505 0.39 +0.3 100,629 + PS417_00505 0.39 +0.8 100,630 - PS417_00505 0.39 +0.4
Or see this region's nucleotide sequence