Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03865 and PS417_03870 are separated by 103 nucleotides PS417_03870 and PS417_03875 overlap by 4 nucleotides PS417_03875 and PS417_03880 are separated by 75 nucleotides PS417_03880 and PS417_03885 overlap by 4 nucleotides
PS417_03865: PS417_03865 - hypothetical protein, at 868,456 to 869,085
_03865
PS417_03870: PS417_03870 - hypothetical protein, at 869,189 to 869,656
_03870
PS417_03875: PS417_03875 - membrane protein, at 869,653 to 870,342
_03875
PS417_03880: PS417_03880 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 870,418 to 870,633
_03880
PS417_03885: PS417_03885 - DNA gyrase inhibitor, at 870,630 to 870,830
_03885
Position (kb) 869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 868.205 kb on + strand at 868.355 kb on + strand at 868.401 kb on + strand at 868.417 kb on + strand at 868.483 kb on + strand at 868.483 kb on + strand at 868.484 kb on - strand at 868.484 kb on - strand at 868.595 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 869.069 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.145 kb on + strand at 869.200 kb on - strand at 869.300 kb on + strand, within PS417_03870 at 869.300 kb on + strand, within PS417_03870 at 869.489 kb on + strand, within PS417_03870 at 869.554 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.720 kb on + strand at 870.070 kb on + strand, within PS417_03875 at 870.071 kb on - strand, within PS417_03875 at 870.072 kb on + strand, within PS417_03875 at 870.427 kb on + strand at 870.427 kb on + strand at 870.613 kb on + strand at 870.613 kb on + strand at 870.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 868,205 + -1.0 868,355 + -0.9 868,401 + +1.7 868,417 + -0.3 868,483 + -0.8 868,483 + +0.7 868,484 - +0.4 868,484 - +0.3 868,595 + PS417_03865 0.22 +0.2 868,700 + PS417_03865 0.39 +0.7 868,700 + PS417_03865 0.39 +0.2 868,701 - PS417_03865 0.39 +1.3 868,701 - PS417_03865 0.39 +1.0 868,704 + PS417_03865 0.39 -0.0 868,704 + PS417_03865 0.39 -0.7 869,069 + -0.9 869,085 + -0.4 869,085 + +1.2 869,085 + -2.4 869,085 + -1.0 869,145 + +0.6 869,200 - +0.5 869,300 + PS417_03870 0.24 -1.3 869,300 + PS417_03870 0.24 +1.5 869,489 + PS417_03870 0.64 -0.2 869,554 + PS417_03870 0.78 -2.4 869,606 + PS417_03870 0.89 +2.2 869,606 + PS417_03870 0.89 +3.3 869,606 + PS417_03870 0.89 -0.7 869,707 + -1.1 869,707 + -1.9 869,707 + -0.7 869,707 + +0.1 869,707 + -2.8 869,720 + -0.2 870,070 + PS417_03875 0.60 -0.0 870,071 - PS417_03875 0.61 -0.7 870,072 + PS417_03875 0.61 +0.1 870,427 + -0.7 870,427 + +0.2 870,613 + -0.8 870,613 + -0.3 870,622 - -0.3
Or see this region's nucleotide sequence