Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03055 and PS417_03060 overlap by 4 nucleotides PS417_03060 and PS417_03065 are separated by 72 nucleotides PS417_03065 and PS417_03070 are separated by 125 nucleotides
PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448
_03055
PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888
_03060
PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410
_03065
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
Position (kb) 705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.667 kb on + strand, within PS417_03055 at 704.668 kb on - strand, within PS417_03055 at 704.668 kb on - strand, within PS417_03055 at 704.712 kb on + strand, within PS417_03055 at 704.874 kb on + strand, within PS417_03055 at 704.883 kb on + strand, within PS417_03055 at 705.289 kb on - strand at 705.530 kb on - strand, within PS417_03060 at 705.530 kb on - strand, within PS417_03060 at 705.536 kb on + strand, within PS417_03060 at 705.537 kb on - strand, within PS417_03060 at 705.587 kb on + strand, within PS417_03060 at 705.588 kb on - strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.690 kb on - strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.789 kb on - strand, within PS417_03060 at 705.803 kb on + strand, within PS417_03060 at 705.913 kb on + strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.928 kb on + strand at 705.928 kb on + strand at 705.929 kb on - strand at 706.015 kb on - strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.169 kb on - strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.370 kb on + strand at 706.371 kb on - strand at 706.391 kb on - strand at 706.426 kb on - strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.436 kb on - strand at 706.451 kb on - strand at 706.457 kb on - strand at 706.463 kb on - strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.478 kb on - strand at 706.547 kb on + strand at 706.548 kb on - strand at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 704,667 + PS417_03055 0.71 -2.4 704,668 - PS417_03055 0.71 -0.2 704,668 - PS417_03055 0.71 -0.5 704,712 + PS417_03055 0.73 -1.5 704,874 + PS417_03055 0.79 -0.4 704,883 + PS417_03055 0.79 +1.9 705,289 - -0.4 705,530 - PS417_03060 0.19 -0.5 705,530 - PS417_03060 0.19 -1.1 705,536 + PS417_03060 0.20 -0.7 705,537 - PS417_03060 0.21 +0.1 705,587 + PS417_03060 0.32 +0.1 705,588 - PS417_03060 0.32 -0.2 705,597 + PS417_03060 0.34 -0.7 705,597 + PS417_03060 0.34 -1.1 705,598 - PS417_03060 0.34 -1.9 705,598 - PS417_03060 0.34 -0.8 705,690 - PS417_03060 0.55 -0.7 705,788 + PS417_03060 0.77 -0.1 705,788 + PS417_03060 0.77 -0.1 705,789 - PS417_03060 0.77 -0.7 705,803 + PS417_03060 0.81 -0.1 705,913 + -0.0 705,914 - -0.8 705,914 - +0.6 705,914 - -1.1 705,928 + -1.1 705,928 + -1.3 705,929 - +2.4 706,015 - PS417_03065 0.12 +0.7 706,075 + PS417_03065 0.25 -1.7 706,075 + PS417_03065 0.25 -1.3 706,076 - PS417_03065 0.26 +0.5 706,076 - PS417_03065 0.26 +0.6 706,169 - PS417_03065 0.46 +1.4 706,230 + PS417_03065 0.60 +0.2 706,230 + PS417_03065 0.60 -0.5 706,370 + +0.5 706,371 - +0.7 706,391 - +0.2 706,426 - -1.5 706,431 + -0.3 706,431 + +0.1 706,431 + -1.0 706,432 - +0.0 706,432 - +0.1 706,432 - +0.1 706,435 + +1.3 706,435 + +0.1 706,435 + +0.7 706,435 + -0.5 706,435 + +0.0 706,436 - -1.5 706,451 - +0.9 706,457 - -0.1 706,463 - -0.1 706,469 + +0.3 706,469 + -0.9 706,469 + +0.8 706,469 + -0.9 706,470 - -1.5 706,470 - +0.6 706,470 - +1.6 706,473 + -0.9 706,473 + +0.5 706,473 + -0.0 706,473 + -1.2 706,473 + -0.5 706,473 + +0.9 706,474 - -1.1 706,474 - +0.1 706,474 - -0.7 706,474 - -0.6 706,474 - -0.4 706,477 + -0.2 706,477 + +0.8 706,477 + -0.3 706,477 + -0.4 706,478 - -0.4 706,547 + -0.4 706,548 - +1.4 706,718 + PS417_03070 0.23 -1.2 706,718 + PS417_03070 0.23 +0.1 706,718 + PS417_03070 0.23 -0.7 706,719 - PS417_03070 0.23 +1.6 706,861 - PS417_03070 0.41 -0.7 706,864 - PS417_03070 0.42 -0.6
Or see this region's nucleotide sequence