Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00290 and PS417_00295 are separated by 131 nucleotides PS417_00295 and PS417_00300 are separated by 367 nucleotides
PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959
_00290
PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738
_00295
PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233
_00300
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.333 kb on - strand, within PS417_00290 at 57.471 kb on + strand, within PS417_00290 at 57.542 kb on + strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.547 kb on - strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.934 kb on + strand at 57.934 kb on + strand at 57.935 kb on - strand at 58.077 kb on - strand at 58.080 kb on - strand at 58.080 kb on - strand at 58.256 kb on + strand, within PS417_00295 at 58.364 kb on - strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.404 kb on + strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.573 kb on - strand, within PS417_00295 at 58.761 kb on + strand at 58.762 kb on - strand at 58.783 kb on + strand at 58.784 kb on - strand at 58.784 kb on - strand at 58.792 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.875 kb on + strand at 58.962 kb on + strand at 58.985 kb on - strand at 59.030 kb on + strand at 59.031 kb on - strand at 59.038 kb on - strand at 59.187 kb on - strand at 59.439 kb on + strand, within PS417_00300 at 59.439 kb on + strand, within PS417_00300 at 59.440 kb on - strand, within PS417_00300 at 59.499 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 57,333 - PS417_00290 0.59 +0.6 57,471 + PS417_00290 0.68 -1.3 57,542 + PS417_00290 0.73 +1.8 57,543 - PS417_00290 0.73 -1.0 57,543 - PS417_00290 0.73 +0.7 57,543 - PS417_00290 0.73 -0.9 57,547 - PS417_00290 0.73 +0.5 57,595 + PS417_00290 0.76 +0.0 57,595 + PS417_00290 0.76 -2.0 57,802 - PS417_00290 0.90 +0.1 57,802 - PS417_00290 0.90 +0.7 57,934 + +0.0 57,934 + -0.8 57,935 - -0.0 58,077 - +2.8 58,080 - -2.1 58,080 - -1.0 58,256 + PS417_00295 0.25 +1.6 58,364 - PS417_00295 0.42 +0.7 58,365 + PS417_00295 0.42 +1.1 58,365 + PS417_00295 0.42 -1.1 58,366 - PS417_00295 0.42 +1.9 58,366 - PS417_00295 0.42 +0.3 58,404 + PS417_00295 0.48 -1.5 58,405 - PS417_00295 0.48 -0.1 58,405 - PS417_00295 0.48 -1.1 58,573 - PS417_00295 0.74 +1.3 58,761 + +0.7 58,762 - +2.2 58,783 + -0.9 58,784 - -0.7 58,784 - +0.2 58,792 + +0.3 58,794 + +1.3 58,794 + +0.2 58,794 + +0.2 58,794 + -0.4 58,875 + -1.1 58,962 + -0.5 58,985 - +0.1 59,030 + +0.0 59,031 - -2.2 59,038 - +1.0 59,187 - -0.6 59,439 + PS417_00300 0.30 -0.0 59,439 + PS417_00300 0.30 -0.5 59,440 - PS417_00300 0.30 +1.1 59,499 + PS417_00300 0.35 +1.4 59,505 + PS417_00300 0.35 -1.2 59,505 + PS417_00300 0.35 +0.0 59,505 + PS417_00300 0.35 -0.4 59,589 + PS417_00300 0.43 +0.2 59,589 + PS417_00300 0.43 -0.2 59,590 - PS417_00300 0.43 +0.5 59,590 - PS417_00300 0.43 -0.7
Or see this region's nucleotide sequence