Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00285 and PS417_00290 are separated by 85 nucleotides PS417_00290 and PS417_00295 are separated by 131 nucleotides
PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326
_00285
PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959
_00290
PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738
_00295
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 55.525 kb on + strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.577 kb on + strand at 55.610 kb on - strand at 55.939 kb on - strand, within PS417_00285 at 55.939 kb on - strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.324 kb on + strand at 56.437 kb on + strand at 56.763 kb on + strand, within PS417_00290 at 56.763 kb on + strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.768 kb on + strand, within PS417_00290 at 56.769 kb on - strand, within PS417_00290 at 56.801 kb on - strand, within PS417_00290 at 56.958 kb on + strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 57.019 kb on + strand, within PS417_00290 at 57.020 kb on - strand, within PS417_00290 at 57.333 kb on - strand, within PS417_00290 at 57.471 kb on + strand, within PS417_00290 at 57.542 kb on + strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.547 kb on - strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.934 kb on + strand at 57.934 kb on + strand at 57.935 kb on - strand at 58.077 kb on - strand at 58.080 kb on - strand at 58.080 kb on - strand at 58.256 kb on + strand, within PS417_00295 at 58.364 kb on - strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.404 kb on + strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.573 kb on - strand, within PS417_00295 at 58.761 kb on + strand at 58.762 kb on - strand at 58.783 kb on + strand at 58.784 kb on - strand at 58.784 kb on - strand at 58.792 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 55,525 + +0.3 55,526 - -2.1 55,526 - +1.7 55,526 - +1.2 55,577 + +0.0 55,610 - -0.6 55,939 - PS417_00285 0.47 -0.0 55,939 - PS417_00285 0.47 +1.1 56,196 + PS417_00285 0.82 +0.3 56,196 + PS417_00285 0.82 +0.4 56,201 - PS417_00285 0.83 +0.2 56,201 - PS417_00285 0.83 +0.4 56,201 - PS417_00285 0.83 +0.6 56,216 + PS417_00285 0.85 -0.1 56,216 + PS417_00285 0.85 +0.4 56,216 + PS417_00285 0.85 -1.0 56,216 + PS417_00285 0.85 +0.6 56,324 + -0.8 56,437 + -1.5 56,763 + PS417_00290 0.23 -0.1 56,763 + PS417_00290 0.23 +2.7 56,764 - PS417_00290 0.23 -0.5 56,764 - PS417_00290 0.23 +1.5 56,768 + PS417_00290 0.23 +0.4 56,769 - PS417_00290 0.23 +1.3 56,801 - PS417_00290 0.25 +2.1 56,958 + PS417_00290 0.35 +0.1 56,959 - PS417_00290 0.35 +1.7 56,959 - PS417_00290 0.35 +0.7 57,019 + PS417_00290 0.39 -1.5 57,020 - PS417_00290 0.39 -0.9 57,333 - PS417_00290 0.59 +0.6 57,471 + PS417_00290 0.68 -1.3 57,542 + PS417_00290 0.73 +1.8 57,543 - PS417_00290 0.73 -1.0 57,543 - PS417_00290 0.73 +0.7 57,543 - PS417_00290 0.73 -0.9 57,547 - PS417_00290 0.73 +0.5 57,595 + PS417_00290 0.76 +0.0 57,595 + PS417_00290 0.76 -2.0 57,802 - PS417_00290 0.90 +0.1 57,802 - PS417_00290 0.90 +0.7 57,934 + +0.0 57,934 + -0.8 57,935 - -0.0 58,077 - +2.8 58,080 - -2.1 58,080 - -1.0 58,256 + PS417_00295 0.25 +1.6 58,364 - PS417_00295 0.42 +0.7 58,365 + PS417_00295 0.42 +1.1 58,365 + PS417_00295 0.42 -1.1 58,366 - PS417_00295 0.42 +1.9 58,366 - PS417_00295 0.42 +0.3 58,404 + PS417_00295 0.48 -1.5 58,405 - PS417_00295 0.48 -0.1 58,405 - PS417_00295 0.48 -1.1 58,573 - PS417_00295 0.74 +1.3 58,761 + +0.7 58,762 - +2.2 58,783 + -0.9 58,784 - -0.7 58,784 - +0.2 58,792 + +0.3 58,794 + +1.3 58,794 + +0.2 58,794 + +0.2 58,794 + -0.4 58,875 + -1.1
Or see this region's nucleotide sequence