Strain Fitness in Pseudomonas simiae WCS417 around PS417_02660

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02655 and PS417_02660 are separated by 231 nucleotidesPS417_02660 and PS417_02665 are separated by 2 nucleotides PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040 _02655 PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186 _02660 PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466 _02665 Position (kb) 609 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 608.332 kb on + strandat 608.332 kb on + strand, within PS417_02655at 608.333 kb on - strand, within PS417_02655at 608.375 kb on + strand, within PS417_02655at 608.433 kb on - strand, within PS417_02655at 608.576 kb on + strand, within PS417_02655at 608.577 kb on - strand, within PS417_02655at 608.577 kb on - strand, within PS417_02655at 608.670 kb on + strand, within PS417_02655at 608.671 kb on - strand, within PS417_02655at 608.726 kb on + strand, within PS417_02655at 608.726 kb on + strand, within PS417_02655at 608.727 kb on - strand, within PS417_02655at 608.727 kb on - strand, within PS417_02655at 608.817 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.982 kb on - strandat 608.990 kb on + strandat 608.991 kb on - strandat 609.015 kb on - strandat 609.038 kb on + strandat 609.039 kb on - strandat 609.039 kb on - strandat 609.044 kb on + strandat 609.127 kb on - strandat 609.139 kb on - strandat 609.139 kb on - strandat 609.139 kb on - strandat 609.202 kb on + strandat 609.280 kb on + strandat 609.281 kb on - strandat 609.281 kb on - strandat 609.360 kb on - strandat 609.401 kb on + strand, within PS417_02660at 609.401 kb on + strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.403 kb on + strand, within PS417_02660at 609.403 kb on + strandat 609.404 kb on - strand, within PS417_02660at 609.404 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.658 kb on + strand, within PS417_02660at 609.659 kb on - strand, within PS417_02660at 609.722 kb on + strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.788 kb on + strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.938 kb on + strand, within PS417_02660at 610.094 kb on + strand, within PS417_02660at 610.184 kb on + strandat 610.184 kb on + strandat 610.184 kb on + strandat 610.185 kb on - strandat 610.185 kb on - strandat 610.185 kb on - strandat 610.446 kb on - strand, within PS417_02665at 610.459 kb on + strand, within PS417_02665at 610.460 kb on - strand, within PS417_02665at 610.460 kb on - strand, within PS417_02665at 610.534 kb on + strand, within PS417_02665at 610.535 kb on - strand, within PS417_02665at 610.535 kb on - strand, within PS417_02665at 610.567 kb on + strand, within PS417_02665at 610.567 kb on + strand, within PS417_02665at 610.568 kb on - strand, within PS417_02665at 610.642 kb on + strand, within PS417_02665at 610.642 kb on + strand, within PS417_02665at 610.748 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.784 kb on - strand, within PS417_02665at 610.935 kb on - strand, within PS417_02665at 610.963 kb on + strand, within PS417_02665at 610.963 kb on + strand, within PS417_02665at 610.964 kb on - strand, within PS417_02665at 610.964 kb on - strand, within PS417_02665at 610.993 kb on + strand, within PS417_02665at 610.994 kb on - strand, within PS417_02665at 610.994 kb on - strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.127 kb on - strand, within PS417_02665at 611.127 kb on - strand, within PS417_02665

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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608,332 + +0.7
608,332 + PS417_02655 0.38 -0.4
608,333 - PS417_02655 0.38 -0.1
608,375 + PS417_02655 0.41 -1.6
608,433 - PS417_02655 0.47 -1.2
608,576 + PS417_02655 0.59 -0.4
608,577 - PS417_02655 0.59 -0.9
608,577 - PS417_02655 0.59 +0.3
608,670 + PS417_02655 0.67 +0.6
608,671 - PS417_02655 0.67 +1.7
608,726 + PS417_02655 0.72 -0.6
608,726 + PS417_02655 0.72 +1.1
608,727 - PS417_02655 0.72 +1.5
608,727 - PS417_02655 0.72 -0.4
608,817 - PS417_02655 0.80 -0.5
608,826 - PS417_02655 0.81 -0.9
608,826 - PS417_02655 0.81 +0.9
608,826 - PS417_02655 0.81 +0.3
608,982 - +0.1
608,990 + +0.4
608,991 - +0.9
609,015 - +0.4
609,038 + -0.0
609,039 - +0.7
609,039 - +0.1
609,044 + +0.2
609,127 - +0.7
609,139 - -0.2
609,139 - -0.7
609,139 - +0.7
609,202 + -0.1
609,280 + +0.8
609,281 - +0.8
609,281 - +0.2
609,360 - -0.2
609,401 + PS417_02660 0.14 -0.4
609,401 + PS417_02660 0.14 +0.8
609,402 - PS417_02660 0.14 -0.8
609,402 - PS417_02660 0.14 -1.0
609,403 + PS417_02660 0.14 +0.2
609,403 + -1.5
609,404 - PS417_02660 0.14 +0.0
609,404 - PS417_02660 0.14 -1.3
609,450 - PS417_02660 0.19 -1.4
609,450 - PS417_02660 0.19 -0.0
609,658 + PS417_02660 0.42 -0.2
609,659 - PS417_02660 0.42 +0.6
609,722 + PS417_02660 0.49 +0.3
609,723 - PS417_02660 0.49 +0.7
609,723 - PS417_02660 0.49 -0.9
609,724 + PS417_02660 0.49 +0.7
609,724 + PS417_02660 0.49 +0.5
609,776 + PS417_02660 0.55 -2.0
609,776 + PS417_02660 0.55 +0.3
609,776 + PS417_02660 0.55 +0.3
609,776 + PS417_02660 0.55 +0.1
609,777 - PS417_02660 0.55 -0.3
609,777 - PS417_02660 0.55 +0.1
609,777 - PS417_02660 0.55 +0.4
609,777 - PS417_02660 0.55 -0.3
609,777 - PS417_02660 0.55 -0.7
609,777 - PS417_02660 0.55 -2.4
609,777 - PS417_02660 0.55 -1.4
609,788 + PS417_02660 0.56 +0.8
609,879 - PS417_02660 0.66 +0.1
609,879 - PS417_02660 0.66 +1.9
609,879 - PS417_02660 0.66 -1.2
609,938 + PS417_02660 0.73 +1.0
610,094 + PS417_02660 0.90 +1.6
610,184 + -0.4
610,184 + +0.1
610,184 + +0.7
610,185 - -0.2
610,185 - +0.6
610,185 - +0.3
610,446 - PS417_02665 0.20 +0.3
610,459 + PS417_02665 0.21 +0.7
610,460 - PS417_02665 0.21 +0.2
610,460 - PS417_02665 0.21 +0.4
610,534 + PS417_02665 0.27 -0.2
610,535 - PS417_02665 0.27 -0.2
610,535 - PS417_02665 0.27 -0.1
610,567 + PS417_02665 0.30 +1.2
610,567 + PS417_02665 0.30 +1.0
610,568 - PS417_02665 0.30 +0.1
610,642 + PS417_02665 0.35 -0.2
610,642 + PS417_02665 0.35 -1.7
610,748 + PS417_02665 0.44 +0.3
610,783 + PS417_02665 0.46 -0.6
610,783 + PS417_02665 0.46 +0.6
610,783 + PS417_02665 0.46 -1.0
610,784 - PS417_02665 0.47 -0.5
610,935 - PS417_02665 0.58 -1.1
610,963 + PS417_02665 0.61 -0.2
610,963 + PS417_02665 0.61 -0.3
610,964 - PS417_02665 0.61 -0.1
610,964 - PS417_02665 0.61 -1.7
610,993 + PS417_02665 0.63 -0.2
610,994 - PS417_02665 0.63 -0.0
610,994 - PS417_02665 0.63 +0.4
611,029 + PS417_02665 0.66 +2.7
611,029 + PS417_02665 0.66 -0.8
611,029 + PS417_02665 0.66 -0.2
611,030 - PS417_02665 0.66 +1.0
611,030 - PS417_02665 0.66 -0.0
611,030 - PS417_02665 0.66 +0.8
611,127 - PS417_02665 0.73 +0.1
611,127 - PS417_02665 0.73 -0.7

Or see this region's nucleotide sequence