Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26580 and PS417_26585 are separated by 1 nucleotides PS417_26585 and PS417_26590 are separated by 67 nucleotides PS417_26590 and PS417_26595 overlap by 4 nucleotides PS417_26595 and PS417_26600 overlap by 7 nucleotides
PS417_26580: PS417_26580 - malonate transporter, at 5,747,698 to 5,748,462
_26580
PS417_26585: PS417_26585 - malonate carrier protein, at 5,748,464 to 5,748,868
_26585
PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835
_26590
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
Position (kb) 5748
5749
5750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5748.018 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.324 kb on + strand, within PS417_26580 at 5748.462 kb on + strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.858 kb on + strand at 5748.862 kb on + strand at 5748.863 kb on - strand at 5748.863 kb on - strand at 5748.949 kb on - strand at 5749.097 kb on - strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.397 kb on + strand, within PS417_26590 at 5749.408 kb on + strand, within PS417_26590 at 5749.619 kb on - strand, within PS417_26590 at 5749.669 kb on - strand, within PS417_26590 at 5749.967 kb on - strand, within PS417_26595 at 5750.613 kb on - strand, within PS417_26600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,748,018 + PS417_26580 0.42 -0.1 5,748,020 + PS417_26580 0.42 -1.8 5,748,020 + PS417_26580 0.42 -0.3 5,748,021 - PS417_26580 0.42 -1.5 5,748,021 - PS417_26580 0.42 -0.0 5,748,324 + PS417_26580 0.82 +1.6 5,748,462 + +1.5 5,748,463 - -1.6 5,748,463 - -0.2 5,748,463 - +0.3 5,748,463 - -2.1 5,748,657 + PS417_26585 0.48 +0.6 5,748,657 + PS417_26585 0.48 -0.1 5,748,657 + PS417_26585 0.48 -1.3 5,748,858 + +0.1 5,748,862 + -0.5 5,748,863 - -0.6 5,748,863 - +0.4 5,748,949 - -0.2 5,749,097 - PS417_26590 0.18 -1.4 5,749,107 + PS417_26590 0.19 +0.7 5,749,107 + PS417_26590 0.19 +1.5 5,749,397 + PS417_26590 0.51 +0.8 5,749,408 + PS417_26590 0.52 -0.9 5,749,619 - PS417_26590 0.76 +0.2 5,749,669 - PS417_26590 0.81 +0.8 5,749,967 - PS417_26595 0.23 +1.9 5,750,613 - PS417_26600 0.26 -0.1
Or see this region's nucleotide sequence