Strain Fitness in Pseudomonas simiae WCS417 around PS417_20210

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
4,389,747	+				+0.8
4,389,902	+		PS417_20205	0.27	+0.0
4,390,224	-		PS417_20205	0.63	-0.6
4,390,265	+		PS417_20205	0.68	-0.4
4,390,265	+		PS417_20205	0.68	-0.9
4,390,266	-		PS417_20205	0.68	-2.6
4,390,266	-		PS417_20205	0.68	-0.2
4,390,266	-		PS417_20205	0.68	-1.4
4,390,356	-		PS417_20205	0.78	-3.1
4,390,421	-		PS417_20205	0.85	-0.7
4,390,630	+				-1.2
4,390,638	+				-0.3
4,390,677	+				+1.0
4,390,678	-				+2.6
4,390,817	+		PS417_20210	0.13	+0.3
4,390,902	+		PS417_20210	0.20	+0.4
4,391,288	+		PS417_20210	0.52	+0.1
4,391,288	+		PS417_20210	0.52	+0.4
4,391,288	+		PS417_20210	0.52	+0.8
4,391,288	+		PS417_20210	0.52	+1.0
4,391,288	+		PS417_20210	0.52	+1.7
4,391,288	+		PS417_20210	0.52	+0.6
4,391,289	-		PS417_20210	0.52	+1.2
4,391,289	-		PS417_20210	0.52	-1.0
4,391,289	-		PS417_20210	0.52	-0.7
4,391,289	-		PS417_20210	0.52	-2.2
4,391,289	-		PS417_20210	0.52	+1.6
4,391,289	-		PS417_20210	0.52	+0.5
4,391,289	-		PS417_20210	0.52	+0.5
4,391,297	+		PS417_20210	0.53	+0.1
4,391,297	+		PS417_20210	0.53	+3.1
4,391,297	+		PS417_20210	0.53	+0.2
4,391,298	-		PS417_20210	0.53	-1.9
4,391,298	-		PS417_20210	0.53	-1.0
4,391,298	-		PS417_20210	0.53	+2.0
4,391,309	+				+0.4
4,391,309	+				+0.0
4,391,310	-		PS417_20210	0.54	-0.6
4,391,310	-		PS417_20210	0.54	+1.2
4,391,310	-		PS417_20210	0.54	-1.3
4,391,578	+		PS417_20210	0.76	+0.9
4,391,579	-		PS417_20210	0.76	+2.3
4,391,842	-				-0.8
4,391,842	-				-0.2
4,391,980	+		PS417_20215	0.14	+0.5
4,392,110	-		PS417_20215	0.23	-0.1
4,392,110	-		PS417_20215	0.23	-0.7
4,392,317	+		PS417_20215	0.37	-0.1
4,392,317	+		PS417_20215	0.37	+0.7
4,392,464	+		PS417_20215	0.48	+0.6
4,392,464	+		PS417_20215	0.48	+0.3
4,392,465	-		PS417_20215	0.48	+0.2
4,392,517	+		PS417_20215	0.51	+0.1
4,392,518	-		PS417_20215	0.51	-0.7
4,392,518	-		PS417_20215	0.51	-1.9
4,392,684	-		PS417_20215	0.63	-0.1
4,392,717	+		PS417_20215	0.65	+0.3
4,392,718	-		PS417_20215	0.65	-1.0
4,392,796	+		PS417_20215	0.71	-0.5
4,392,796	+		PS417_20215	0.71	-0.7
4,392,856	+		PS417_20215	0.75	-3.0
4,392,856	+		PS417_20215	0.75	+0.9
4,392,857	-		PS417_20215	0.75	-0.8