Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01405 and PS417_01410 overlap by 23 nucleotides PS417_01410 and PS417_01415 overlap by 11 nucleotides
PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699
_01405
PS417_01410: PS417_01410 - transporter, at 311,677 to 312,672
_01410
PS417_01415: PS417_01415 - glycosyl transferase family 1, at 312,662 to 314,176
_01415
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 310.714 kb on - strand, within PS417_01405 at 311.596 kb on + strand at 311.649 kb on - strand at 311.649 kb on - strand at 311.659 kb on - strand at 311.659 kb on - strand at 311.950 kb on + strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 312.323 kb on - strand, within PS417_01410 at 312.577 kb on + strand at 312.671 kb on - strand at 312.725 kb on + strand at 312.726 kb on - strand at 312.741 kb on + strand at 312.741 kb on + strand at 312.824 kb on + strand, within PS417_01415 at 312.825 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 313.033 kb on + strand, within PS417_01415 at 313.034 kb on - strand, within PS417_01415 at 313.050 kb on + strand, within PS417_01415 at 313.092 kb on - strand, within PS417_01415 at 313.128 kb on - strand, within PS417_01415 at 313.277 kb on + strand, within PS417_01415 at 313.278 kb on - strand, within PS417_01415 at 313.278 kb on - strand, within PS417_01415 at 313.297 kb on + strand, within PS417_01415 at 313.298 kb on - strand, within PS417_01415 at 313.298 kb on - strand, within PS417_01415 at 313.301 kb on + strand, within PS417_01415 at 313.397 kb on + strand, within PS417_01415 at 313.421 kb on + strand, within PS417_01415 at 313.422 kb on - strand, within PS417_01415 at 313.448 kb on + strand, within PS417_01415 at 313.449 kb on - strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 310,714 - PS417_01405 0.28 -0.6 311,596 + -1.0 311,649 - -1.1 311,649 - -0.6 311,659 - -1.1 311,659 - +1.7 311,950 + PS417_01410 0.27 -1.4 311,951 - PS417_01410 0.28 -0.6 311,951 - PS417_01410 0.28 -1.1 311,951 - PS417_01410 0.28 -0.7 312,323 - PS417_01410 0.65 -0.7 312,577 + -0.9 312,671 - -0.2 312,725 + -1.0 312,726 - -0.9 312,741 + -0.5 312,741 + -0.6 312,824 + PS417_01415 0.11 +0.1 312,825 - PS417_01415 0.11 -0.6 312,827 - PS417_01415 0.11 +1.0 312,827 - PS417_01415 0.11 -1.0 312,827 - PS417_01415 0.11 -2.2 313,033 + PS417_01415 0.24 -1.1 313,034 - PS417_01415 0.25 -0.6 313,050 + PS417_01415 0.26 -0.5 313,092 - PS417_01415 0.28 -0.8 313,128 - PS417_01415 0.31 +0.1 313,277 + PS417_01415 0.41 -0.9 313,278 - PS417_01415 0.41 -2.3 313,278 - PS417_01415 0.41 -2.3 313,297 + PS417_01415 0.42 -0.9 313,298 - PS417_01415 0.42 -0.7 313,298 - PS417_01415 0.42 -0.1 313,301 + PS417_01415 0.42 -1.4 313,397 + PS417_01415 0.49 -0.7 313,421 + PS417_01415 0.50 -1.0 313,422 - PS417_01415 0.50 +0.8 313,448 + PS417_01415 0.52 -0.8 313,449 - PS417_01415 0.52 -0.2 313,478 + PS417_01415 0.54 +0.4 313,478 + PS417_01415 0.54 -1.4 313,478 + PS417_01415 0.54 -0.6
Or see this region's nucleotide sequence