Strain Fitness in Pseudomonas simiae WCS417 around PS417_01390

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01385 and PS417_01390 are separated by 62 nucleotidesPS417_01390 and PS417_01395 overlap by 23 nucleotides PS417_01385: PS417_01385 - NAD-dependent dehydratase, at 302,396 to 303,328 _01385 PS417_01390: PS417_01390 - PbsX family transcriptional regulator, at 303,391 to 306,204 _01390 PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781 _01395 Position (kb) 303 304 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.404 kb on - strandat 302.438 kb on - strandat 302.477 kb on + strandat 302.512 kb on + strand, within PS417_01385at 302.832 kb on - strand, within PS417_01385at 302.859 kb on - strand, within PS417_01385at 302.859 kb on - strandat 302.861 kb on + strand, within PS417_01385at 302.874 kb on - strand, within PS417_01385at 303.007 kb on + strand, within PS417_01385at 303.008 kb on - strand, within PS417_01385at 303.048 kb on - strand, within PS417_01385at 303.120 kb on + strand, within PS417_01385at 303.201 kb on - strand, within PS417_01385at 303.245 kb on - strandat 303.326 kb on + strandat 303.326 kb on + strandat 303.326 kb on + strandat 303.354 kb on + strandat 303.354 kb on + strandat 303.355 kb on - strandat 303.362 kb on - strandat 303.386 kb on - strandat 303.495 kb on - strandat 303.643 kb on + strandat 303.644 kb on - strandat 303.817 kb on + strand, within PS417_01390at 304.139 kb on - strand, within PS417_01390at 304.351 kb on + strand, within PS417_01390at 304.351 kb on + strand, within PS417_01390at 304.352 kb on - strand, within PS417_01390at 304.352 kb on - strand, within PS417_01390at 304.403 kb on - strand, within PS417_01390at 304.420 kb on + strand, within PS417_01390at 304.421 kb on - strand, within PS417_01390at 304.421 kb on - strand, within PS417_01390at 304.799 kb on - strand, within PS417_01390at 305.011 kb on + strandat 305.012 kb on - strand, within PS417_01390at 305.136 kb on + strand, within PS417_01390at 305.504 kb on - strandat 305.504 kb on - strand, within PS417_01390at 305.507 kb on - strand, within PS417_01390at 305.557 kb on + strand, within PS417_01390at 305.558 kb on - strand, within PS417_01390at 305.636 kb on - strand, within PS417_01390at 305.689 kb on + strand, within PS417_01390at 305.690 kb on - strand, within PS417_01390at 305.738 kb on - strand, within PS417_01390at 305.738 kb on - strand, within PS417_01390at 305.762 kb on - strand, within PS417_01390at 305.915 kb on - strand, within PS417_01390at 306.202 kb on + strandat 306.203 kb on - strandat 306.338 kb on + strandat 306.338 kb on + strandat 306.339 kb on - strandat 306.339 kb on - strandat 306.349 kb on - strandat 306.482 kb on + strandat 306.694 kb on + strand, within PS417_01395at 306.707 kb on - strand, within PS417_01395at 306.764 kb on + strand, within PS417_01395at 306.764 kb on + strand, within PS417_01395at 306.765 kb on - strand, within PS417_01395at 306.765 kb on - strand, within PS417_01395at 306.775 kb on + strand, within PS417_01395at 306.775 kb on + strand, within PS417_01395at 306.776 kb on - strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.057 kb on + strand, within PS417_01395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
remove
302,404 - -0.9
302,438 - -0.1
302,477 + -1.0
302,512 + PS417_01385 0.12 -0.3
302,832 - PS417_01385 0.47 +0.4
302,859 - PS417_01385 0.50 -0.7
302,859 - -0.3
302,861 + PS417_01385 0.50 +1.8
302,874 - PS417_01385 0.51 +0.9
303,007 + PS417_01385 0.65 +1.0
303,008 - PS417_01385 0.66 +0.4
303,048 - PS417_01385 0.70 -0.6
303,120 + PS417_01385 0.78 +1.7
303,201 - PS417_01385 0.86 -0.3
303,245 - -1.4
303,326 + +0.4
303,326 + -0.0
303,326 + +2.6
303,354 + +0.8
303,354 + +1.8
303,355 - -1.9
303,362 - +1.4
303,386 - -1.6
303,495 - -0.5
303,643 + -0.9
303,644 - -0.6
303,817 + PS417_01390 0.15 -1.5
304,139 - PS417_01390 0.27 -1.6
304,351 + PS417_01390 0.34 -0.8
304,351 + PS417_01390 0.34 -1.2
304,352 - PS417_01390 0.34 -1.3
304,352 - PS417_01390 0.34 -1.1
304,403 - PS417_01390 0.36 -1.6
304,420 + PS417_01390 0.37 -1.6
304,421 - PS417_01390 0.37 +0.1
304,421 - PS417_01390 0.37 -3.0
304,799 - PS417_01390 0.50 -3.7
305,011 + +0.1
305,012 - PS417_01390 0.58 -1.2
305,136 + PS417_01390 0.62 -1.1
305,504 - -0.9
305,504 - PS417_01390 0.75 -0.0
305,507 - PS417_01390 0.75 -0.8
305,557 + PS417_01390 0.77 -0.6
305,558 - PS417_01390 0.77 -0.1
305,636 - PS417_01390 0.80 -1.1
305,689 + PS417_01390 0.82 -1.1
305,690 - PS417_01390 0.82 -0.3
305,738 - PS417_01390 0.83 -1.5
305,738 - PS417_01390 0.83 -0.4
305,762 - PS417_01390 0.84 -0.3
305,915 - PS417_01390 0.90 -0.7
306,202 + +1.1
306,203 - -1.6
306,338 + -0.5
306,338 + -0.5
306,339 - -1.0
306,339 - -0.7
306,349 - -1.3
306,482 + +0.0
306,694 + PS417_01395 0.14 -1.0
306,707 - PS417_01395 0.15 -1.3
306,764 + PS417_01395 0.16 -0.9
306,764 + PS417_01395 0.16 -1.1
306,765 - PS417_01395 0.16 -0.4
306,765 - PS417_01395 0.16 -2.1
306,775 + PS417_01395 0.16 +1.1
306,775 + PS417_01395 0.16 -1.3
306,776 - PS417_01395 0.17 -0.7
307,047 + PS417_01395 0.24 -1.2
307,047 + PS417_01395 0.24 -1.2
307,047 + PS417_01395 0.24 -1.6
307,048 - PS417_01395 0.24 +0.0
307,048 - PS417_01395 0.24 -0.4
307,048 - PS417_01395 0.24 -0.7
307,057 + PS417_01395 0.24 -1.0

Or see this region's nucleotide sequence