Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01085 and PS417_01090 are separated by 186 nucleotides PS417_01090 and PS417_01095 are separated by 371 nucleotides
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.758 kb on - strand, within PS417_01085 at 238.981 kb on - strand at 238.981 kb on - strand at 239.011 kb on - strand at 239.011 kb on - strand at 239.072 kb on - strand at 239.213 kb on + strand at 239.213 kb on + strand at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand at 239.991 kb on + strand at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 238,429 + +1.7 238,475 + PS417_01085 0.59 -0.1 238,475 + PS417_01085 0.59 -0.9 238,499 + PS417_01085 0.61 +0.9 238,499 + +0.5 238,499 + PS417_01085 0.61 -0.4 238,500 - PS417_01085 0.61 +0.2 238,500 - PS417_01085 0.61 +0.2 238,758 - PS417_01085 0.82 -0.2 238,981 - -1.3 238,981 - -0.4 239,011 - -0.3 239,011 - +0.1 239,072 - -0.3 239,213 + -1.9 239,213 + -0.1 239,318 + PS417_01090 0.19 +1.5 239,318 + PS417_01090 0.19 +4.5 239,318 + PS417_01090 0.19 +0.4 239,377 + PS417_01090 0.27 -0.3 239,378 - PS417_01090 0.27 +0.4 239,591 + PS417_01090 0.55 -0.2 239,592 - PS417_01090 0.55 +0.5 239,635 + PS417_01090 0.60 +0.6 239,636 - PS417_01090 0.61 -0.7 239,636 - PS417_01090 0.61 +0.3 239,636 - PS417_01090 0.61 +0.1 239,636 - PS417_01090 0.61 -1.6 239,687 + PS417_01090 0.67 +1.0 239,838 - PS417_01090 0.87 +1.2 239,938 - +0.4 239,941 + -0.3 239,941 + -0.2 239,942 - -0.1 239,991 + +0.3 240,061 + -0.0 240,062 - +0.3 240,062 - -0.7 240,176 + -1.9 240,202 - +0.4 240,245 - -0.5 240,263 + -0.2 240,282 + +1.1 240,567 + PS417_01095 0.35 -0.4 240,568 - PS417_01095 0.35 +0.7 240,568 - PS417_01095 0.35 +1.2
Or see this region's nucleotide sequence