Strain Fitness in Pseudomonas simiae WCS417 around PS417_08940

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,945,169	+				-0.3
1,945,173	+				+0.9
1,945,174	-				+1.5
1,945,217	+				+1.9
1,945,245	+				+3.0
1,945,245	+				+0.5
1,945,245	+				+0.3
1,945,373	-		PS417_08930	0.44	-0.1
1,945,373	-		PS417_08930	0.44	+0.1
1,945,499	+				+1.3
1,945,499	+				+0.1
1,945,499	+				-0.1
1,945,500	-				+2.0
1,945,500	-				-1.4
1,945,537	-				+1.2
1,945,537	-				-1.3
1,945,540	+				+1.9
1,945,540	+				-0.5
1,945,572	-				+1.4
1,945,588	+				-0.2
1,945,589	-				+2.5
1,945,592	+				-0.6
1,945,592	+				+0.3
1,945,592	+				-0.3
1,945,592	+				-0.0
1,945,593	-				-0.1
1,945,593	-				-0.6
1,945,593	-				-0.3
1,945,593	-				-2.1
1,945,593	-				-0.6
1,945,594	+				+0.4
1,945,594	+				-0.9
1,945,594	+				+0.0
1,945,595	-				+0.5
1,945,595	-				-0.5
1,945,597	-				-0.8
1,945,597	-				+0.4
1,945,652	+				+0.5
1,945,655	+				+0.1
1,945,775	+		PS417_08935	0.22	-0.7
1,945,775	+		PS417_08935	0.22	+0.5
1,945,792	-		PS417_08935	0.25	+0.3
1,945,892	-		PS417_08935	0.46	-1.3
1,945,892	-		PS417_08935	0.46	+0.6
1,945,938	+		PS417_08935	0.56	-0.8
1,945,938	+		PS417_08935	0.56	-0.2
1,945,938	+		PS417_08935	0.56	-1.1
1,945,939	-				-0.6
1,946,031	+		PS417_08935	0.75	-0.6
1,946,078	+		PS417_08935	0.85	+1.0
1,946,078	+		PS417_08935	0.85	+0.7
1,946,079	-		PS417_08935	0.86	+1.0
1,946,079	-		PS417_08935	0.86	-0.9
1,946,196	-		PS417_08940	0.11	+0.9
1,946,299	+		PS417_08940	0.34	+1.2
1,946,299	+		PS417_08940	0.34	+0.1
1,946,300	-		PS417_08940	0.34	+2.1
1,946,300	-		PS417_08940	0.34	-0.1
1,946,300	-		PS417_08940	0.34	+0.8
1,946,463	-				+5.2
1,946,768	-				-0.3
1,946,831	+				-0.5
1,947,105	-		PS417_08945	0.22	+0.1
1,947,234	+		PS417_08945	0.29	-1.1
1,947,235	-		PS417_08945	0.29	-0.2
1,947,235	-		PS417_08945	0.29	-0.9
1,947,276	+		PS417_08945	0.31	-0.0
1,947,292	+		PS417_08945	0.32	-0.1
1,947,293	-		PS417_08945	0.32	+0.8
1,947,439	+		PS417_08945	0.40	+0.8
1,947,451	+		PS417_08945	0.40	+0.1
1,947,524	-		PS417_08945	0.44	-1.4
1,947,538	+		PS417_08945	0.45	+3.0