Strain Fitness in Pseudomonas simiae WCS417 around PS417_07810

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,715,949	-				+1.1
1,715,949	-				+0.5
1,715,969	+				+1.2
1,715,969	+				+0.2
1,715,970	-				-0.7
1,715,970	-				-2.1
1,716,027	+				+0.6
1,716,027	+				-0.8
1,716,027	+				-0.7
1,716,038	+				+0.6
1,716,038	+				-1.1
1,716,038	+				-1.7
1,716,038	+				+1.9
1,716,039	-				-1.0
1,716,039	-				+1.7
1,716,161	+				+0.6
1,716,166	+				-1.5
1,716,166	+				-0.3
1,716,246	+		PS417_07805	0.15	+0.4
1,716,246	+		PS417_07805	0.15	-0.1
1,716,246	+		PS417_07805	0.15	-0.5
1,716,246	+				-0.9
1,716,246	+		PS417_07805	0.15	-0.4
1,716,247	-		PS417_07805	0.15	-1.5
1,716,247	-		PS417_07805	0.15	+1.3
1,716,292	+		PS417_07805	0.21	+0.1
1,716,292	+		PS417_07805	0.21	-0.5
1,716,293	-		PS417_07805	0.22	+0.1
1,716,293	-		PS417_07805	0.22	-0.7
1,716,295	+		PS417_07805	0.22	-0.1
1,716,296	-		PS417_07805	0.22	+0.4
1,716,352	-		PS417_07805	0.30	+0.5
1,716,367	+		PS417_07805	0.32	+0.4
1,716,367	+		PS417_07805	0.32	+0.4
1,716,368	-		PS417_07805	0.32	-2.1
1,716,660	-				-0.6
1,716,691	+		PS417_07805	0.77	+1.4
1,716,726	+		PS417_07805	0.82	-0.7
1,716,728	+		PS417_07805	0.83	+0.5
1,716,732	+		PS417_07805	0.83	-1.1
1,716,733	-		PS417_07805	0.83	+0.2
1,716,733	-		PS417_07805	0.83	-0.4
1,716,733	-				+0.7
1,716,733	-		PS417_07805	0.83	-0.2
1,716,768	+		PS417_07805	0.88	+0.1
1,716,768	+		PS417_07805	0.88	-0.6
1,716,768	+		PS417_07805	0.88	-0.6
1,716,768	+		PS417_07805	0.88	+0.2
1,716,808	+				+1.0
1,716,848	+				-1.2
1,716,997	+				+0.9
1,716,997	+				-0.5
1,716,997	+				-0.2
1,716,998	-				+1.1
1,717,139	+		PS417_07810	0.23	+1.1
1,717,140	-		PS417_07810	0.23	+2.6
1,717,142	-		PS417_07810	0.23	+3.2
1,717,142	-		PS417_07810	0.23	-0.9
1,717,142	-		PS417_07810	0.23	+1.6
1,717,154	+		PS417_07810	0.25	+0.8
1,717,207	+		PS417_07810	0.31	-0.5
1,717,297	+		PS417_07810	0.41	+0.5
1,717,348	+		PS417_07810	0.47	-0.2
1,717,354	+		PS417_07810	0.47	-0.9
1,717,355	-		PS417_07810	0.48	+0.1
1,717,392	+		PS417_07810	0.52	+0.9
1,717,426	+		PS417_07810	0.56	+0.6
1,717,477	+		PS417_07810	0.62	+0.1
1,717,477	+		PS417_07810	0.62	-0.1
1,717,498	+		PS417_07810	0.64	+0.3
1,717,617	+		PS417_07810	0.78	-0.2
1,717,618	-		PS417_07810	0.78	+0.0
1,717,618	-		PS417_07810	0.78	+1.5
1,717,618	-		PS417_07810	0.78	+0.1
1,717,763	+				-1.3
1,717,993	+		PS417_07815	0.12	+0.7
1,717,993	+		PS417_07815	0.12	-0.3
1,718,100	+		PS417_07815	0.59	-0.5
1,718,100	+		PS417_07815	0.59	-0.5
1,718,100	+		PS417_07815	0.59	-2.0
1,718,100	+		PS417_07815	0.59	+1.1
1,718,100	+				-2.0
1,718,145	+		PS417_07815	0.79	-1.4
1,718,146	-		PS417_07815	0.80	+0.7
1,718,169	-				+0.3
1,718,192	-				+0.2
1,718,204	+				-0.4
1,718,204	+				-3.1
1,718,204	+				+0.1
1,718,205	-				+0.4
1,718,205	-				-0.7
1,718,211	-				+1.3
1,718,273	+				-1.5
1,718,274	-				-1.8
1,718,274	-				-0.6
1,718,274	-				-1.3
1,718,274	-				-0.9
1,718,284	+				-0.3
1,718,284	+				-0.4
1,718,285	-				-1.2
1,718,285	-				+0.1
1,718,285	-				-0.7
1,718,293	-				+0.6
1,718,326	+				+0.9
1,718,326	+				+0.1
1,718,326	+				-0.2
1,718,326	+				+1.0
1,718,326	+				-0.1
1,718,326	+				-0.3
1,718,326	+				-0.3
1,718,326	+				-0.0
1,718,327	-				-0.3
1,718,327	-				-1.2
1,718,327	-				+0.4
1,718,327	-				-0.2
1,718,327	-				-0.1
1,718,327	-				+0.3
1,718,354	+				-1.2
1,718,437	+				-1.6
1,718,437	+				-0.3
1,718,438	-				+0.4
1,718,438	-				+0.1
1,718,438	-				-2.5
1,718,640	+		PS417_07820	0.58	-0.5
1,718,640	+		PS417_07820	0.58	-0.9
1,718,641	-		PS417_07820	0.58	-1.4
1,718,641	-		PS417_07820	0.58	-1.3
1,718,790	+				+2.5
1,718,790	+				+1.5
1,718,790	+				+0.0
1,718,791	-				-0.2
1,718,791	-				-1.8