Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00660 and PS417_00665 overlap by 4 nucleotides PS417_00665 and PS417_00670 are separated by 74 nucleotides PS417_00670 and PS417_00675 overlap by 4 nucleotides
PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304
_00660
PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746
_00665
PS417_00670: PS417_00670 - RNA polymerase sigma factor, at 137,821 to 138,330
_00670
PS417_00675: PS417_00675 - iron dicitrate transport regulator FecR, at 138,327 to 139,277
_00675
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 135.309 kb on + strand at 135.310 kb on - strand at 135.310 kb on - strand at 135.518 kb on + strand, within PS417_00660 at 135.870 kb on + strand, within PS417_00660 at 135.871 kb on - strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.984 kb on + strand, within PS417_00660 at 135.985 kb on - strand, within PS417_00660 at 136.023 kb on - strand, within PS417_00660 at 136.292 kb on - strand at 136.502 kb on - strand, within PS417_00665 at 136.502 kb on - strand, within PS417_00665 at 136.625 kb on + strand, within PS417_00665 at 136.626 kb on - strand, within PS417_00665 at 136.848 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 137.000 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.487 kb on - strand, within PS417_00665 at 137.570 kb on + strand, within PS417_00665 at 137.571 kb on - strand, within PS417_00665 at 137.687 kb on + strand at 137.688 kb on - strand at 137.864 kb on - strand at 138.004 kb on + strand, within PS417_00670 at 138.070 kb on + strand, within PS417_00670 at 138.071 kb on - strand, within PS417_00670 at 138.204 kb on - strand, within PS417_00670 at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.616 kb on - strand, within PS417_00675
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 135,309 + -0.2 135,310 - +0.4 135,310 - +2.9 135,518 + PS417_00660 0.26 +1.7 135,870 + PS417_00660 0.59 +2.2 135,871 - PS417_00660 0.59 +1.6 135,933 + PS417_00660 0.65 +0.6 135,933 + PS417_00660 0.65 +0.7 135,984 + PS417_00660 0.70 -0.9 135,985 - PS417_00660 0.70 -1.1 136,023 - PS417_00660 0.73 +1.6 136,292 - +0.2 136,502 - PS417_00665 0.14 -1.0 136,502 - PS417_00665 0.14 -1.4 136,625 + PS417_00665 0.22 -1.3 136,626 - PS417_00665 0.22 -1.1 136,848 - PS417_00665 0.38 -0.3 136,867 - PS417_00665 0.39 -1.1 136,867 - PS417_00665 0.39 -0.8 137,000 - PS417_00665 0.48 -1.8 137,433 - PS417_00665 0.78 -1.0 137,433 - PS417_00665 0.78 +0.1 137,433 - PS417_00665 0.78 +0.1 137,487 - PS417_00665 0.82 -0.8 137,570 + PS417_00665 0.88 +0.9 137,571 - PS417_00665 0.88 -0.8 137,687 + -2.1 137,688 - +1.4 137,864 - +2.7 138,004 + PS417_00670 0.36 -0.0 138,070 + PS417_00670 0.49 -0.6 138,071 - PS417_00670 0.49 +1.3 138,204 - PS417_00670 0.75 +0.2 138,280 + +0.8 138,280 + +0.7 138,280 + -0.6 138,280 + +0.7 138,280 + +0.4 138,281 - -1.9 138,281 - -1.3 138,281 - -1.0 138,616 - PS417_00675 0.30 +0.2
Or see this region's nucleotide sequence