Strain Fitness in Pseudomonas simiae WCS417 around PS417_05925

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,316,386	+		PS417_05920	0.42	-1.7
1,316,386	+		PS417_05920	0.42	-0.8
1,316,387	-		PS417_05920	0.42	-0.2
1,316,706	-		PS417_05920	0.65	-0.1
1,316,758	+		PS417_05920	0.68	+1.6
1,316,758	+		PS417_05920	0.68	-0.9
1,316,759	-		PS417_05920	0.69	+1.2
1,316,830	+		PS417_05920	0.74	+0.9
1,316,831	-		PS417_05920	0.74	-0.2
1,316,886	+		PS417_05920	0.77	+0.4
1,316,887	-		PS417_05920	0.78	+0.1
1,316,887	-		PS417_05920	0.78	-0.4
1,317,144	+				-1.3
1,317,172	-				-1.4
1,317,221	-				-2.7
1,317,386	-				-0.7
1,317,430	+				-1.1
1,317,430	+				-0.8
1,317,434	-				-1.0
1,317,434	-				-0.1
1,317,434	-				+0.7
1,317,434	-				-1.0
1,317,656	-		PS417_05925	0.34	-0.5
1,317,749	-		PS417_05925	0.45	-0.5
1,317,759	+		PS417_05925	0.46	-1.1
1,317,923	-		PS417_05925	0.67	+0.0
1,318,102	+		PS417_05925	0.89	-1.2
1,318,172	+				+0.1
1,318,173	-				-0.8
1,318,173	-				-1.7
1,318,173	-				-0.9
1,318,173	-				+0.6
1,318,173	-				+0.9
1,318,226	+				+0.4
1,318,547	+		PS417_05930	0.39	-0.1
1,318,547	+		PS417_05930	0.39	-0.3
1,318,548	-		PS417_05930	0.39	-0.7
1,318,703	+		PS417_05930	0.56	+2.2
1,318,704	-		PS417_05930	0.56	-0.7
1,318,719	-		PS417_05930	0.58	-2.5
1,318,751	+		PS417_05930	0.61	-0.9
1,318,752	-		PS417_05930	0.61	+0.5
1,318,793	+		PS417_05930	0.66	-1.1
1,318,793	+		PS417_05930	0.66	+1.3
1,318,794	-		PS417_05930	0.66	-0.5
1,318,797	-		PS417_05930	0.66	+0.6
1,318,953	+		PS417_05930	0.83	+0.0
1,318,953	+		PS417_05930	0.83	-0.7
1,318,953	+		PS417_05930	0.83	-0.3
1,318,955	+		PS417_05930	0.83	-0.9
1,318,955	+		PS417_05930	0.83	+0.4