Strain Fitness in Pseudomonas simiae WCS417 around PS417_05405

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
1,210,488	+		PS417_05400	0.29	+0.0
1,210,488	+		PS417_05400	0.29	-0.4
1,210,489	-		PS417_05400	0.29	-0.4
1,210,530	-		PS417_05400	0.37	-0.6
1,210,594	+		PS417_05400	0.49	+0.2
1,210,595	-		PS417_05400	0.49	-0.7
1,210,595	-		PS417_05400	0.49	+0.8
1,210,595	-		PS417_05400	0.49	-3.0
1,211,171	+				-0.2
1,211,171	+				+0.6
1,211,171	+				+0.5
1,211,172	-				-1.7
1,211,172	-				-0.4
1,211,173	+				-1.2
1,211,173	+				+0.2
1,211,174	-				-0.3
1,211,174	-				+1.0
1,211,180	+				-0.3
1,211,181	-				-0.0
1,211,185	-				+0.6
1,211,274	-				+0.5
1,211,347	+				-0.2
1,211,347	+				+1.1
1,211,347	+				-0.3
1,211,348	-				-0.2
1,211,348	-				+0.0
1,211,350	-				-0.9
1,211,562	+				-0.1
1,211,659	+		PS417_05405	0.12	+0.4
1,211,660	-		PS417_05405	0.12	+0.3
1,211,660	-		PS417_05405	0.12	+0.3
1,211,660	-		PS417_05405	0.12	+1.3
1,211,800	+		PS417_05405	0.22	+1.5
1,211,800	+		PS417_05405	0.22	-1.7
1,211,800	+		PS417_05405	0.22	-0.2
1,211,801	-		PS417_05405	0.22	+0.9
1,211,854	+				+1.9
1,211,854	+		PS417_05405	0.26	+0.1
1,212,211	-		PS417_05405	0.51	-0.7
1,212,256	+		PS417_05405	0.54	+0.8
1,212,257	-		PS417_05405	0.54	+0.1
1,212,445	+		PS417_05405	0.68	-0.4
1,212,805	+				-0.7
1,212,805	+				-0.9
1,212,806	-				-0.9
1,212,806	-				-2.2
1,212,806	-				+0.8
1,212,806	-				+0.6
1,212,847	+				+0.4
1,212,847	+				-0.2
1,212,848	-				-0.3
1,213,025	-				+0.9
1,213,051	-				-0.2
1,213,051	-				-1.1
1,213,292	+		PS417_05410	0.25	-2.1
1,213,353	-		PS417_05410	0.31	+0.5
1,213,628	+				+3.2
1,213,628	+		PS417_05410	0.55	+0.3
1,213,891	-		PS417_05410	0.78	+0.5
1,213,891	-		PS417_05410	0.78	+0.1
1,213,902	-		PS417_05410	0.79	-1.8