Strain Fitness in Pseudomonas simiae WCS417 around PS417_04430

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04425 and PS417_04430 are separated by 124 nucleotidesPS417_04430 and PS417_04435 are separated by 2 nucleotidesPS417_04435 and PS417_04440 are separated by 164 nucleotides PS417_04425: PS417_04425 - histidinol-phosphate aminotransferase, at 983,344 to 984,396 _04425 PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795 _04430 PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436 _04435 PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158 _04440 Position (kb) 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 983.557 kb on + strand, within PS417_04425at 983.558 kb on - strand, within PS417_04425at 983.558 kb on - strand, within PS417_04425at 983.558 kb on - strand, within PS417_04425at 983.675 kb on - strand, within PS417_04425at 983.823 kb on - strand, within PS417_04425at 983.823 kb on - strand, within PS417_04425at 983.894 kb on - strand, within PS417_04425at 983.894 kb on - strand, within PS417_04425at 983.894 kb on - strand, within PS417_04425at 983.999 kb on + strandat 984.000 kb on - strand, within PS417_04425at 984.124 kb on + strand, within PS417_04425at 984.125 kb on - strand, within PS417_04425at 984.163 kb on - strand, within PS417_04425at 984.458 kb on + strandat 984.458 kb on + strandat 984.459 kb on - strandat 984.469 kb on + strandat 984.469 kb on + strandat 984.469 kb on + strandat 984.469 kb on + strandat 984.469 kb on + strandat 984.469 kb on + strandat 984.470 kb on - strandat 984.519 kb on - strandat 984.523 kb on - strandat 984.523 kb on - strandat 984.842 kb on - strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.939 kb on + strand, within PS417_04430at 984.940 kb on - strand, within PS417_04430at 984.940 kb on - strandat 985.210 kb on - strand, within PS417_04430at 985.381 kb on + strand, within PS417_04430at 985.420 kb on + strand, within PS417_04430at 985.420 kb on + strand, within PS417_04430at 985.421 kb on - strand, within PS417_04430at 985.504 kb on + strand, within PS417_04430at 985.504 kb on + strand, within PS417_04430at 985.505 kb on - strand, within PS417_04430at 985.505 kb on - strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.507 kb on - strand, within PS417_04430at 985.507 kb on - strand, within PS417_04430at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.863 kb on - strand, within PS417_04435at 985.901 kb on + strand, within PS417_04435at 985.939 kb on + strand, within PS417_04435at 985.940 kb on - strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.176 kb on + strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.233 kb on - strand, within PS417_04435at 986.283 kb on - strand, within PS417_04435at 986.315 kb on + strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.367 kb on + strand, within PS417_04435at 986.368 kb on - strand, within PS417_04435at 986.385 kb on + strandat 986.386 kb on - strandat 986.477 kb on + strandat 986.478 kb on - strandat 986.500 kb on + strandat 986.500 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.503 kb on - strandat 986.510 kb on + strandat 986.510 kb on + strandat 986.511 kb on - strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.555 kb on + strandat 986.555 kb on + strandat 986.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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983,557 + PS417_04425 0.20 +0.2
983,558 - PS417_04425 0.20 -0.2
983,558 - PS417_04425 0.20 -0.0
983,558 - PS417_04425 0.20 +1.4
983,675 - PS417_04425 0.31 +0.0
983,823 - PS417_04425 0.45 +0.2
983,823 - PS417_04425 0.45 -0.9
983,894 - PS417_04425 0.52 -1.3
983,894 - PS417_04425 0.52 -1.6
983,894 - PS417_04425 0.52 +1.4
983,999 + -0.6
984,000 - PS417_04425 0.62 +2.3
984,124 + PS417_04425 0.74 +0.4
984,125 - PS417_04425 0.74 -0.5
984,163 - PS417_04425 0.78 -1.6
984,458 + -0.6
984,458 + -0.5
984,459 - +0.7
984,469 + +1.0
984,469 + +0.5
984,469 + +0.4
984,469 + +0.7
984,469 + -1.4
984,469 + -0.5
984,470 - +0.0
984,519 - +0.1
984,523 - +0.9
984,523 - +0.7
984,842 - PS417_04430 0.25 +0.4
984,900 + PS417_04430 0.30 +0.1
984,900 + PS417_04430 0.30 -0.0
984,900 + PS417_04430 0.30 +1.4
984,939 + PS417_04430 0.33 -0.7
984,940 - PS417_04430 0.33 -1.9
984,940 - -1.2
985,210 - PS417_04430 0.54 +0.3
985,381 + PS417_04430 0.67 -1.3
985,420 + PS417_04430 0.71 -1.9
985,420 + PS417_04430 0.71 -1.3
985,421 - PS417_04430 0.71 -1.6
985,504 + PS417_04430 0.77 +0.3
985,504 + PS417_04430 0.77 +0.0
985,505 - PS417_04430 0.77 -0.0
985,505 - PS417_04430 0.77 -1.0
985,506 + PS417_04430 0.77 +0.2
985,506 + PS417_04430 0.77 -2.1
985,506 + PS417_04430 0.77 -0.2
985,507 - PS417_04430 0.77 -0.7
985,507 - PS417_04430 0.77 -1.3
985,862 + PS417_04435 0.10 +0.7
985,862 + PS417_04435 0.10 -0.1
985,862 + PS417_04435 0.10 +0.8
985,863 - PS417_04435 0.10 -0.8
985,901 + PS417_04435 0.16 +0.4
985,939 + PS417_04435 0.22 +1.1
985,940 - PS417_04435 0.22 -0.6
986,099 + PS417_04435 0.47 -0.5
986,099 + PS417_04435 0.47 +0.1
986,100 - PS417_04435 0.47 -0.9
986,100 - PS417_04435 0.47 -0.2
986,100 - PS417_04435 0.47 -1.6
986,100 - PS417_04435 0.47 -2.2
986,176 + PS417_04435 0.59 +0.3
986,177 - PS417_04435 0.59 -0.1
986,177 - PS417_04435 0.59 +1.4
986,177 - PS417_04435 0.59 -0.2
986,233 - PS417_04435 0.68 +0.2
986,283 - PS417_04435 0.76 +0.4
986,315 + PS417_04435 0.81 +0.0
986,316 - PS417_04435 0.81 -1.3
986,316 - PS417_04435 0.81 +0.3
986,367 + PS417_04435 0.89 -1.2
986,368 - PS417_04435 0.89 +0.4
986,385 + -0.1
986,386 - -0.0
986,477 + -1.6
986,478 - -1.0
986,500 + -1.6
986,500 + -1.8
986,502 + -0.3
986,502 + -0.5
986,502 + -0.3
986,502 + +0.1
986,502 + -0.9
986,502 + +0.3
986,503 - +0.4
986,510 + +0.5
986,510 + +0.5
986,511 - -0.9
986,513 + -0.5
986,513 + +0.1
986,513 + +0.1
986,513 + +0.1
986,514 - -3.0
986,514 - -0.4
986,514 - +1.4
986,514 - +0.9
986,555 + -1.4
986,555 + -1.0
986,655 + +0.3

Or see this region's nucleotide sequence