Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00415 and PS417_00420 are separated by 34 nucleotides PS417_00420 and PS417_00425 are separated by 168 nucleotides PS417_00425 and PS417_00430 are separated by 10 nucleotides PS417_00430 and PS417_00435 overlap by 4 nucleotides
PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161
_00415
PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822
_00420
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515
_00430
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 82.159 kb on + strand at 82.159 kb on + strand at 82.159 kb on + strand at 82.166 kb on + strand at 82.821 kb on - strand at 82.832 kb on - strand at 82.849 kb on - strand at 82.868 kb on - strand at 82.971 kb on + strand at 82.985 kb on + strand at 83.624 kb on + strand at 83.790 kb on + strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 84.189 kb on + strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.213 kb on + strand, within PS417_00430 at 84.214 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.371 kb on + strand, within PS417_00430 at 84.551 kb on - strand at 84.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 82,159 + -1.7 82,159 + -3.3 82,159 + -1.4 82,166 + -2.0 82,821 - -0.3 82,832 - -0.0 82,849 - -1.8 82,868 - +3.3 82,971 + -0.1 82,985 + +1.4 83,624 + -0.9 83,790 + PS417_00430 0.17 +0.1 83,791 - PS417_00430 0.18 +0.3 83,791 - PS417_00430 0.18 +1.0 83,791 - PS417_00430 0.18 +1.0 84,189 + PS417_00430 0.63 +1.1 84,190 - PS417_00430 0.63 +0.1 84,190 - PS417_00430 0.63 -0.8 84,190 - PS417_00430 0.63 +0.4 84,213 + PS417_00430 0.66 -0.0 84,214 - PS417_00430 0.66 -0.5 84,357 - PS417_00430 0.82 -3.1 84,357 - PS417_00430 0.82 -2.0 84,371 + PS417_00430 0.84 +0.4 84,551 - -0.3 84,551 - +0.0
Or see this region's nucleotide sequence