Strain Fitness in Pseudomonas simiae WCS417 around PS417_04205

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04200 and PS417_04205 are separated by 99 nucleotidesPS417_04205 and PS417_04210 are separated by 11 nucleotides PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 940,805 to 942,250 _04200 PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) (from data), at 942,350 to 943,714 _04205 PS417_04210: PS417_04210 - Galactarate dehydratase (EC 4.2.1.42) (from data), at 943,726 to 945,279 _04210 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.817 kb on - strand, within PS417_04200at 941.817 kb on - strand, within PS417_04200at 941.817 kb on - strand, within PS417_04200at 941.894 kb on + strand, within PS417_04200at 941.894 kb on + strand, within PS417_04200at 941.895 kb on - strand, within PS417_04200at 941.895 kb on - strand, within PS417_04200at 941.895 kb on - strand, within PS417_04200at 941.895 kb on - strand, within PS417_04200at 941.895 kb on - strand, within PS417_04200at 941.938 kb on + strand, within PS417_04200at 941.939 kb on - strand, within PS417_04200at 942.068 kb on + strand, within PS417_04200at 942.141 kb on - strandat 942.215 kb on + strandat 942.236 kb on + strandat 942.237 kb on - strandat 942.237 kb on - strandat 942.237 kb on - strandat 942.248 kb on + strandat 942.249 kb on - strandat 942.252 kb on - strandat 942.252 kb on - strandat 942.252 kb on - strandat 942.332 kb on + strandat 942.333 kb on - strandat 942.341 kb on + strandat 942.342 kb on - strandat 942.381 kb on - strandat 942.381 kb on - strandat 942.422 kb on + strandat 942.423 kb on - strandat 942.423 kb on - strandat 942.500 kb on + strand, within PS417_04205at 942.527 kb on + strand, within PS417_04205at 942.635 kb on + strand, within PS417_04205at 942.636 kb on - strand, within PS417_04205at 942.636 kb on - strand, within PS417_04205at 942.791 kb on - strand, within PS417_04205at 942.803 kb on + strand, within PS417_04205at 942.848 kb on + strand, within PS417_04205at 943.055 kb on + strand, within PS417_04205at 943.055 kb on + strand, within PS417_04205at 943.055 kb on + strand, within PS417_04205at 943.056 kb on - strand, within PS417_04205at 943.056 kb on - strand, within PS417_04205at 943.098 kb on - strand, within PS417_04205at 943.142 kb on - strand, within PS417_04205at 943.157 kb on + strand, within PS417_04205at 943.358 kb on + strand, within PS417_04205at 943.541 kb on + strand, within PS417_04205at 943.542 kb on - strand, within PS417_04205at 943.542 kb on - strand, within PS417_04205at 943.620 kb on - strandat 943.650 kb on + strandat 943.651 kb on - strandat 943.651 kb on - strandat 943.651 kb on - strandat 943.651 kb on - strandat 943.651 kb on - strandat 943.651 kb on - strandat 943.939 kb on + strand, within PS417_04210at 944.282 kb on - strand, within PS417_04210at 944.282 kb on - strand, within PS417_04210at 944.282 kb on - strand, within PS417_04210at 944.282 kb on - strand, within PS417_04210at 944.696 kb on - strand, within PS417_04210

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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941,817 - PS417_04200 0.70 +0.0
941,817 - PS417_04200 0.70 -1.4
941,817 - PS417_04200 0.70 -3.4
941,894 + PS417_04200 0.75 +0.7
941,894 + PS417_04200 0.75 -0.4
941,895 - PS417_04200 0.75 +0.6
941,895 - PS417_04200 0.75 +0.2
941,895 - PS417_04200 0.75 +0.8
941,895 - PS417_04200 0.75 +0.0
941,895 - PS417_04200 0.75 +0.4
941,938 + PS417_04200 0.78 +0.7
941,939 - PS417_04200 0.78 -0.9
942,068 + PS417_04200 0.87 -1.1
942,141 - +1.3
942,215 + -0.1
942,236 + -0.6
942,237 - +1.4
942,237 - -0.6
942,237 - +0.0
942,248 + -0.4
942,249 - -0.3
942,252 - -0.0
942,252 - -0.0
942,252 - -0.3
942,332 + -1.6
942,333 - +1.2
942,341 + +0.5
942,342 - -2.1
942,381 - -0.4
942,381 - +2.4
942,422 + +0.7
942,423 - +0.1
942,423 - +0.2
942,500 + PS417_04205 0.11 -1.8
942,527 + PS417_04205 0.13 +0.8
942,635 + PS417_04205 0.21 +0.4
942,636 - PS417_04205 0.21 +0.5
942,636 - PS417_04205 0.21 -0.4
942,791 - PS417_04205 0.32 +0.4
942,803 + PS417_04205 0.33 -0.7
942,848 + PS417_04205 0.36 -0.6
943,055 + PS417_04205 0.52 +0.1
943,055 + PS417_04205 0.52 +0.3
943,055 + PS417_04205 0.52 -0.2
943,056 - PS417_04205 0.52 -0.5
943,056 - PS417_04205 0.52 +0.2
943,098 - PS417_04205 0.55 +0.4
943,142 - PS417_04205 0.58 -0.2
943,157 + PS417_04205 0.59 -0.5
943,358 + PS417_04205 0.74 -1.3
943,541 + PS417_04205 0.87 -0.2
943,542 - PS417_04205 0.87 +0.4
943,542 - PS417_04205 0.87 -1.7
943,620 - -1.4
943,650 + -0.3
943,651 - -1.0
943,651 - +0.7
943,651 - +0.4
943,651 - -1.2
943,651 - +0.1
943,651 - +1.4
943,939 + PS417_04210 0.14 -0.2
944,282 - PS417_04210 0.36 -2.5
944,282 - PS417_04210 0.36 +0.6
944,282 - PS417_04210 0.36 +0.2
944,282 - PS417_04210 0.36 -1.4
944,696 - PS417_04210 0.62 +1.0

Or see this region's nucleotide sequence