Strain Fitness in Pseudomonas simiae WCS417 around PS417_04195

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04190 and PS417_04195 are separated by 234 nucleotidesPS417_04195 and PS417_04200 are separated by 54 nucleotides PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604 _04190 PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data), at 939,839 to 940,750 _04195 PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 940,805 to 942,250 _04200 Position (kb) 939 940 941Strain fitness (log2 ratio) -2 -1 0 1 2at 938.912 kb on + strand, within PS417_04190at 938.977 kb on - strand, within PS417_04190at 939.057 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.188 kb on - strand, within PS417_04190at 939.322 kb on + strand, within PS417_04190at 939.323 kb on - strand, within PS417_04190at 939.323 kb on - strand, within PS417_04190at 939.348 kb on - strand, within PS417_04190at 939.348 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.433 kb on - strand, within PS417_04190at 939.433 kb on - strand, within PS417_04190at 939.607 kb on + strandat 939.607 kb on + strandat 939.608 kb on - strandat 939.608 kb on - strandat 939.608 kb on - strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.672 kb on + strandat 939.673 kb on - strandat 939.673 kb on - strandat 939.837 kb on + strandat 939.838 kb on - strandat 939.936 kb on - strand, within PS417_04195at 940.179 kb on - strand, within PS417_04195at 940.179 kb on - strand, within PS417_04195at 940.374 kb on + strand, within PS417_04195at 940.404 kb on - strand, within PS417_04195at 940.404 kb on - strand, within PS417_04195at 940.470 kb on - strand, within PS417_04195at 940.517 kb on + strand, within PS417_04195at 940.707 kb on - strandat 940.758 kb on - strandat 940.758 kb on - strandat 940.758 kb on - strandat 940.758 kb on - strandat 940.758 kb on - strandat 940.758 kb on - strandat 940.832 kb on + strandat 940.832 kb on + strandat 940.832 kb on + strandat 940.832 kb on + strandat 940.833 kb on - strandat 940.833 kb on - strandat 940.833 kb on - strandat 940.833 kb on - strandat 941.131 kb on + strand, within PS417_04200at 941.178 kb on - strand, within PS417_04200at 941.178 kb on - strand, within PS417_04200at 941.208 kb on + strand, within PS417_04200at 941.208 kb on + strand, within PS417_04200at 941.209 kb on - strand, within PS417_04200at 941.209 kb on - strand, within PS417_04200

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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938,912 + PS417_04190 0.40 -0.6
938,977 - PS417_04190 0.46 +1.1
939,057 + PS417_04190 0.53 -0.5
939,187 + PS417_04190 0.64 -0.5
939,187 + PS417_04190 0.64 +0.2
939,187 + PS417_04190 0.64 +0.8
939,187 + PS417_04190 0.64 +0.8
939,188 - PS417_04190 0.64 -1.7
939,322 + PS417_04190 0.76 -0.2
939,323 - PS417_04190 0.76 +0.1
939,323 - PS417_04190 0.76 -0.9
939,348 - PS417_04190 0.78 +0.4
939,348 - PS417_04190 0.78 +0.4
939,400 - PS417_04190 0.82 -1.8
939,400 - PS417_04190 0.82 -2.0
939,400 - PS417_04190 0.82 -0.9
939,433 - PS417_04190 0.85 -0.8
939,433 - PS417_04190 0.85 +0.9
939,607 + -0.2
939,607 + -1.2
939,608 - +0.1
939,608 - -1.7
939,608 - +0.0
939,618 + +2.5
939,618 + -0.7
939,618 + +0.9
939,618 + -0.4
939,618 + -2.0
939,618 + +0.4
939,618 + -1.2
939,619 - -0.4
939,619 - -0.9
939,619 - +0.4
939,619 - -2.3
939,619 - +1.3
939,672 + +1.4
939,673 - +0.6
939,673 - -0.7
939,837 + -0.5
939,838 - +0.0
939,936 - PS417_04195 0.11 +0.0
940,179 - PS417_04195 0.37 -0.5
940,179 - PS417_04195 0.37 -0.8
940,374 + PS417_04195 0.59 +0.1
940,404 - PS417_04195 0.62 -0.9
940,404 - PS417_04195 0.62 +0.1
940,470 - PS417_04195 0.69 +1.9
940,517 + PS417_04195 0.74 -1.1
940,707 - +0.9
940,758 - -0.6
940,758 - -0.2
940,758 - +0.4
940,758 - -0.8
940,758 - -1.1
940,758 - +0.5
940,832 + -0.4
940,832 + +0.4
940,832 + -0.9
940,832 + -0.8
940,833 - -1.2
940,833 - +0.6
940,833 - -1.3
940,833 - +0.1
941,131 + PS417_04200 0.23 -0.8
941,178 - PS417_04200 0.26 -0.4
941,178 - PS417_04200 0.26 -2.7
941,208 + PS417_04200 0.28 -0.1
941,208 + PS417_04200 0.28 +1.3
941,209 - PS417_04200 0.28 +0.8
941,209 - PS417_04200 0.28 +0.3

Or see this region's nucleotide sequence