Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27040 and PS417_27045 are separated by 63 nucleotides PS417_27045 and PS417_27050 are separated by 134 nucleotides PS417_27050 and PS417_27055 are separated by 37 nucleotides PS417_27055 and PS417_27060 are separated by 2 nucleotides
PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519
_27040
PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023
_27045
PS417_27050: PS417_27050 - ABC transporter substrate-binding protein, at 5,841,158 to 5,841,652
_27050
PS417_27055: PS417_27055 - hypothetical protein, at 5,841,690 to 5,842,184
_27055
PS417_27060: PS417_27060 - 2OG-Fe(II) oxygenase, at 5,842,187 to 5,842,819
_27060
Position (kb) 5841
5842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5840.233 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.584 kb on + strand at 5840.584 kb on + strand at 5840.588 kb on + strand at 5840.616 kb on + strand at 5840.616 kb on + strand at 5840.617 kb on - strand at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.911 kb on - strand, within PS417_27045 at 5841.104 kb on + strand at 5841.104 kb on + strand at 5841.148 kb on - strand at 5841.180 kb on + strand at 5841.180 kb on + strand at 5841.181 kb on - strand at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.235 kb on - strand, within PS417_27050 at 5841.373 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.377 kb on - strand at 5841.422 kb on + strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.448 kb on + strand, within PS417_27050 at 5841.691 kb on + strand at 5841.692 kb on - strand at 5841.693 kb on + strand at 5842.053 kb on + strand, within PS417_27055 at 5842.321 kb on - strand, within PS417_27060 at 5842.321 kb on - strand, within PS417_27060 at 5842.341 kb on + strand, within PS417_27060 at 5842.341 kb on + strand, within PS417_27060 at 5842.341 kb on + strand, within PS417_27060 at 5842.341 kb on + strand, within PS417_27060 at 5842.342 kb on - strand, within PS417_27060 at 5842.342 kb on - strand, within PS417_27060 at 5842.450 kb on - strand, within PS417_27060 at 5842.552 kb on + strand, within PS417_27060 at 5842.553 kb on - strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.554 kb on + strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.555 kb on - strand, within PS417_27060 at 5842.612 kb on + strand, within PS417_27060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml remove 5,840,233 - PS417_27040 0.77 -1.4 5,840,233 - PS417_27040 0.77 -0.2 5,840,584 + +1.0 5,840,584 + +0.5 5,840,588 + +0.9 5,840,616 + +0.9 5,840,616 + +0.8 5,840,617 - +0.9 5,840,910 + PS417_27045 0.74 -2.4 5,840,910 + PS417_27045 0.74 +0.1 5,840,910 + PS417_27045 0.74 +1.0 5,840,911 - PS417_27045 0.74 -0.6 5,841,104 + +1.1 5,841,104 + +1.2 5,841,148 - -1.3 5,841,180 + -1.1 5,841,180 + +0.4 5,841,181 - +0.1 5,841,234 + PS417_27050 0.15 -2.9 5,841,234 + PS417_27050 0.15 -2.1 5,841,234 + PS417_27050 0.15 -1.8 5,841,234 + PS417_27050 0.15 +2.4 5,841,235 - PS417_27050 0.16 -0.8 5,841,373 + PS417_27050 0.43 -0.9 5,841,376 + PS417_27050 0.44 +0.0 5,841,376 + PS417_27050 0.44 -0.1 5,841,377 - -1.3 5,841,422 + PS417_27050 0.53 -0.2 5,841,423 - PS417_27050 0.54 -0.0 5,841,423 - PS417_27050 0.54 -0.4 5,841,448 + PS417_27050 0.59 -1.3 5,841,691 + +0.7 5,841,692 - -0.9 5,841,693 + -0.4 5,842,053 + PS417_27055 0.73 -0.2 5,842,321 - PS417_27060 0.21 -1.3 5,842,321 - PS417_27060 0.21 -0.0 5,842,341 + PS417_27060 0.24 -1.7 5,842,341 + PS417_27060 0.24 +0.2 5,842,341 + PS417_27060 0.24 +0.1 5,842,341 + PS417_27060 0.24 +0.9 5,842,342 - PS417_27060 0.24 -0.1 5,842,342 - PS417_27060 0.24 +1.0 5,842,450 - PS417_27060 0.42 -0.4 5,842,552 + PS417_27060 0.58 +0.2 5,842,553 - PS417_27060 0.58 -0.5 5,842,554 + PS417_27060 0.58 +0.1 5,842,554 + PS417_27060 0.58 +0.5 5,842,554 + PS417_27060 0.58 +3.3 5,842,554 + PS417_27060 0.58 +0.3 5,842,554 + PS417_27060 0.58 -0.3 5,842,554 + PS417_27060 0.58 +0.6 5,842,554 + PS417_27060 0.58 -1.4 5,842,554 + PS417_27060 0.58 -0.4 5,842,554 + PS417_27060 0.58 +1.6 5,842,554 + PS417_27060 0.58 +1.1 5,842,554 + PS417_27060 0.58 -0.8 5,842,554 + PS417_27060 0.58 +0.8 5,842,554 + PS417_27060 0.58 +0.1 5,842,554 + PS417_27060 0.58 +0.0 5,842,555 - PS417_27060 0.58 -0.2 5,842,555 - PS417_27060 0.58 +0.3 5,842,555 - PS417_27060 0.58 +1.5 5,842,555 - PS417_27060 0.58 -2.9 5,842,555 - PS417_27060 0.58 +0.0 5,842,555 - +0.3 5,842,555 - PS417_27060 0.58 +3.1 5,842,555 - PS417_27060 0.58 -1.9 5,842,555 - PS417_27060 0.58 +0.5 5,842,555 - PS417_27060 0.58 -0.4 5,842,555 - PS417_27060 0.58 +1.0 5,842,612 + PS417_27060 0.67 +2.6
Or see this region's nucleotide sequence