Strain Fitness in Pseudomonas simiae WCS417 around PS417_26335

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.003 mg/ml
5,691,942	+		PS417_26330	0.75	+0.4
5,691,969	+		PS417_26330	0.76	+0.2
5,691,969	+		PS417_26330	0.76	+0.7
5,692,068	+		PS417_26330	0.81	-1.3
5,692,069	-		PS417_26330	0.81	-0.3
5,692,069	-		PS417_26330	0.81	+0.2
5,692,099	-		PS417_26330	0.83	-0.1
5,692,099	-		PS417_26330	0.83	-1.2
5,692,237	-		PS417_26330	0.90	+0.2
5,692,237	-		PS417_26330	0.90	-0.5
5,692,257	+				-0.4
5,692,257	+				+0.4
5,692,257	+				+0.8
5,692,257	+				-2.6
5,692,258	-				+0.9
5,692,258	-				-0.1
5,692,261	-				-0.9
5,692,374	+				-0.5
5,692,375	-				-1.2
5,692,375	-				-1.9
5,692,375	-				-1.1
5,692,419	-				-0.9
5,692,419	-				+0.5
5,692,419	-				+1.1
5,692,420	+				+0.6
5,692,420	+				+0.7
5,692,421	-				-1.3
5,692,421	-				-0.2
5,692,531	-				+0.1
5,692,711	-				-1.1
5,692,770	+				+0.4
5,692,770	+				-0.2
5,692,770	+				+0.2
5,692,770	+				-0.9
5,692,771	-				-3.9
5,692,771	-				-0.6
5,692,787	+				-0.9
5,692,918	-		PS417_26335	0.24	-1.9
5,692,959	+		PS417_26335	0.31	-0.4
5,693,172	+		PS417_26335	0.67	-1.6
5,693,173	-		PS417_26335	0.67	+1.5
5,693,331	+				-3.2
5,693,331	+				+1.0
5,693,331	+				+0.5
5,693,332	-				-2.1
5,693,332	-				-1.1
5,693,365	-				-1.9
5,693,373	+				+1.0
5,693,373	+				+1.3
5,693,373	+				-0.1
5,693,374	-				-0.1
5,693,374	-				-1.3
5,693,374	-				-1.0
5,693,374	-				-1.1
5,693,374	-				-1.1
5,693,374	-				-0.0
5,693,376	-				+0.2
5,693,457	+				+0.3
5,693,504	+				+1.5
5,693,504	+				-2.0
5,693,519	+				-3.0
5,693,662	+		PS417_26340	0.13	-2.1
5,693,663	-		PS417_26340	0.13	-2.0
5,693,784	-		PS417_26340	0.21	-0.9
5,693,820	-		PS417_26340	0.23	+0.3
5,693,820	-		PS417_26340	0.23	-0.2
5,693,885	+		PS417_26340	0.28	-1.9
5,693,885	+		PS417_26340	0.28	-0.1
5,693,936	+		PS417_26340	0.31	-0.1
5,694,315	-		PS417_26340	0.57	-2.2