Strain Fitness in Pseudomonas simiae WCS417 around PS417_26300
Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.003 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,683,042 | + | +0.1 | |||
| 5,683,261 | + | -1.0 | |||
| 5,683,262 | - | -2.0 | |||
| 5,683,318 | - | -0.1 | |||
| 5,683,320 | + | -0.9 | |||
| 5,683,321 | - | -1.9 | |||
| 5,683,329 | + | -0.7 | |||
| 5,683,330 | - | +0.1 | |||
| 5,683,618 | + | PS417_26300 | 0.62 | +0.5 | |
| 5,683,618 | + | PS417_26300 | 0.62 | +0.1 | |
| 5,683,618 | + | PS417_26300 | 0.62 | -0.7 | |
| 5,683,619 | - | PS417_26300 | 0.63 | +0.8 | |
| 5,683,619 | - | PS417_26300 | 0.63 | -2.4 | |
| 5,683,619 | - | PS417_26300 | 0.63 | -0.5 | |
| 5,683,619 | - | PS417_26300 | 0.63 | -1.5 | |
| 5,683,717 | + | +0.5 | |||
| 5,683,825 | - | +1.3 | |||
| 5,683,833 | - | +0.3 | |||
| 5,683,902 | - | +1.5 | |||
| 5,683,955 | + | PS417_26305 | 0.12 | +1.1 | |
| 5,683,986 | + | PS417_26305 | 0.15 | -0.3 | |
| 5,684,110 | - | PS417_26305 | 0.26 | -0.7 | |
| 5,684,112 | + | PS417_26305 | 0.26 | -1.4 | |
| 5,684,182 | - | PS417_26305 | 0.33 | -0.9 |
Or see this region's nucleotide sequence