Strain Fitness in Pseudomonas simiae WCS417 around PS417_02530

Experiment: R2A with Polymyxin B sulfate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02525 and PS417_02530 overlap by 1 nucleotidesPS417_02530 and PS417_02535 are separated by 144 nucleotidesPS417_02535 and PS417_02540 are separated by 152 nucleotidesPS417_02540 and PS417_02545 are separated by 152 nucleotidesPS417_02545 and PS417_02550 are separated by 152 nucleotides PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753 _02525 PS417_02530: PS417_02530 - iron ABC transporter substrate-binding protein, at 579,753 to 580,778 _02530 PS417_02535: PS417_02535 - tRNA-Leu, at 580,923 to 581,009 _02535 PS417_02540: PS417_02540 - tRNA-Leu, at 581,162 to 581,248 _02540 PS417_02545: PS417_02545 - tRNA-Leu, at 581,401 to 581,487 _02545 PS417_02550: PS417_02550 - tRNA-Leu, at 581,640 to 581,726 _02550 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.105 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.170 kb on - strand, within PS417_02525at 579.566 kb on + strand, within PS417_02525at 579.586 kb on + strand, within PS417_02525at 579.629 kb on + strandat 579.629 kb on + strandat 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.040 kb on - strand, within PS417_02530at 580.090 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.094 kb on - strand, within PS417_02530at 580.162 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.426 kb on - strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.507 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.658 kb on - strand, within PS417_02530at 580.687 kb on + strandat 581.765 kb on - strandat 581.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.003 mg/ml
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578,831 - PS417_02525 0.41 +0.6
578,831 - PS417_02525 0.41 -0.6
578,831 - PS417_02525 0.41 -2.2
578,897 + PS417_02525 0.45 -0.6
578,897 + PS417_02525 0.45 +1.2
578,897 + PS417_02525 0.45 +0.4
579,010 + PS417_02525 0.52 -1.6
579,010 + PS417_02525 0.52 +1.2
579,093 - PS417_02525 0.58 -0.0
579,093 - PS417_02525 0.58 -0.4
579,105 + PS417_02525 0.59 +0.5
579,153 + PS417_02525 0.62 -0.1
579,153 + PS417_02525 0.62 -0.9
579,153 + PS417_02525 0.62 -1.6
579,154 - PS417_02525 0.62 -0.7
579,154 - PS417_02525 0.62 -0.6
579,154 - PS417_02525 0.62 +0.4
579,170 - PS417_02525 0.63 -0.4
579,566 + PS417_02525 0.88 +0.3
579,586 + PS417_02525 0.89 -0.6
579,629 + -1.2
579,629 + -0.2
580,039 + PS417_02530 0.28 +0.6
580,039 + PS417_02530 0.28 -2.6
580,039 + PS417_02530 0.28 -1.1
580,040 - PS417_02530 0.28 -1.6
580,090 + PS417_02530 0.33 +0.4
580,093 + PS417_02530 0.33 -0.3
580,093 + PS417_02530 0.33 +0.8
580,093 + PS417_02530 0.33 -0.7
580,094 - PS417_02530 0.33 -1.0
580,162 + PS417_02530 0.40 -1.6
580,414 + PS417_02530 0.64 +0.1
580,414 + PS417_02530 0.64 -1.5
580,414 + PS417_02530 0.64 -0.6
580,426 - PS417_02530 0.66 -0.8
580,428 + PS417_02530 0.66 -0.7
580,428 + PS417_02530 0.66 -0.4
580,428 + PS417_02530 0.66 -0.8
580,428 + PS417_02530 0.66 -0.7
580,429 - PS417_02530 0.66 -0.9
580,429 - PS417_02530 0.66 +0.3
580,429 - PS417_02530 0.66 +2.4
580,507 + PS417_02530 0.73 -0.8
580,581 + PS417_02530 0.81 -0.4
580,581 + PS417_02530 0.81 -0.1
580,582 - PS417_02530 0.81 +0.8
580,582 - PS417_02530 0.81 -0.2
580,658 - PS417_02530 0.88 +1.7
580,687 + +0.1
581,765 - -2.2
581,767 - +0.4

Or see this region's nucleotide sequence